Repositories list

• probjax

  Public
  Playing around with JAX for probabilistic computations. (@manuelgloeckler)

  Python

  •

  MIT License

  •00 forks in mackelab/probjax•00 stars in mackelab/probjax•11 issue in mackelab/probjax•00 pull requests in mackelab/probjax•Updated Oct 21, 2026Oct 21, 2026

• swm_rnn

  Public
  Modelling sequence working memory data from Chen et al. 2024 @Matthijspals

  Python

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  Apache License 2.0

  •00 forks in mackelab/swm_rnn•11 star in mackelab/swm_rnn•00 issues in mackelab/swm_rnn•00 pull requests in mackelab/swm_rnn•Updated Oct 1, 2026Oct 1, 2026

• EDAPT

  Public
  EDAPT: Towards Calibration-Free BCIs with Continual Online Adaptation

  Jupyter Notebook

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  MIT License

  •00 forks in mackelab/EDAPT•11 star in mackelab/EDAPT•00 issues in mackelab/EDAPT•00 pull requests in mackelab/EDAPT•Updated Sep 30, 2026Sep 30, 2026

• mrextrap

  Public
  MRExtrap: Longitudinal aging of brain MRIs using linear modeling in latent space (arXiv:2508.19482)

  Python

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  Other

  •00 forks in mackelab/mrextrap•11 star in mackelab/mrextrap•00 issues in mackelab/mrextrap•00 pull requests in mackelab/mrextrap•Updated Sep 30, 2026Sep 30, 2026

• ModelSMC

  Public
  Official implementation of "A Probabilistic Framework for LLM-Based Model Discovery", ICML 2026.

  Python

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  MIT License

  •00 forks in mackelab/ModelSMC•44 stars in mackelab/ModelSMC•11 issue in mackelab/ModelSMC•00 pull requests in mackelab/ModelSMC•Updated Sep 21, 2026Sep 21, 2026

• STG_energy

  Public
  Repo for STG energy paper. Michael (@michaeldeistler) and Pedro (@ppjgoncalves).

  Jupyter Notebook

  •11 fork in mackelab/STG_energy•11 star in mackelab/STG_energy•00 issues in mackelab/STG_energy•00 pull requests in mackelab/STG_energy•Updated Sep 1, 2026Sep 1, 2026

• tsnpe_neurips

  Public
  Code to reproduce results from `Truncated proposals for scalable and hassle-free simulation-based inference`

  Jupyter Notebook

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  GNU Affero General Public License v3.0

  •33 forks in mackelab/tsnpe_neurips•44 stars in mackelab/tsnpe_neurips•00 issues in mackelab/tsnpe_neurips•00 pull requests in mackelab/tsnpe_neurips•Updated Sep 1, 2026Sep 1, 2026

• dmri

  Public
  This uses a Simformer like architecture to perform simulation-based model selection @manuelgloeckler

  Python

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  MIT License

  •00 forks in mackelab/dmri•00 stars in mackelab/dmri•00 issues in mackelab/dmri•00 pull requests in mackelab/dmri•Updated Aug 20, 2026Aug 20, 2026

• tsnpe_neurips_data

  Public
  Results data (~3.1 GB, .pkl inference results) for mackelab/tsnpe_neurips — consumed as a submodule at l5pc/results/ to keep code clones free of Git LFS bandwid…

  00 forks in mackelab/tsnpe_neurips_data•00 stars in mackelab/tsnpe_neurips_data•00 issues in mackelab/tsnpe_neurips_data•00 pull requests in mackelab/tsnpe_neurips_data•Updated Jul 25, 2026Jul 25, 2026

• epiphyte

  Public
  Python toolkit for working with high-dimensional neural data recorded during naturalistic, continuous stimuli

  Python

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  GNU General Public License v3.0

  •11 fork in mackelab/epiphyte•99 stars in mackelab/epiphyte•00 issues in mackelab/epiphyte•00 pull requests in mackelab/epiphyte•Updated Jun 12, 2026Jun 12, 2026

• PRIME

  Public
  Jupyter Notebook

  •22 forks in mackelab/PRIME•44 stars in mackelab/PRIME•00 issues in mackelab/PRIME•00 pull requests in mackelab/PRIME•Updated Jun 3, 2026Jun 3, 2026

• velocity-hypothesis-test

  Public
  velotest: a hypothesis test for velocity visualisations by Sebastian @Baschdl

  Jupyter Notebook

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  MIT License

  •00 forks in mackelab/velocity-hypothesis-test•00 stars in mackelab/velocity-hypothesis-test•22 issues in mackelab/velocity-hypothesis-test•00 pull requests in mackelab/velocity-hypothesis-test•Updated May 13, 2026May 13, 2026

• fnope

  Public
  Code for "FNOPE: Simulation-based inference on function spaces with Fourier Neural Operators"

  Python

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  MIT License

  •00 forks in mackelab/fnope•11 star in mackelab/fnope•00 issues in mackelab/fnope•11 pull request in mackelab/fnope•Updated Apr 28, 2026Apr 28, 2026

• npe-pfn

  Public
  Minimal repository for the paper "Effortless, Simulation-Efficient Bayesian Inference using Tabular Foundation Models", NeurIPS 2025.

  Python

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  Other

  •55 forks in mackelab/npe-pfn•77 stars in mackelab/npe-pfn•00 issues in mackelab/npe-pfn•00 pull requests in mackelab/npe-pfn•Updated Mar 20, 2026Mar 20, 2026

• prism

  Public
  00 forks in mackelab/prism•00 stars in mackelab/prism•00 issues in mackelab/prism•00 pull requests in mackelab/prism•Updated Feb 25, 2026Feb 25, 2026

• LDNS

  Public
  Jupyter Notebook

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  MIT License

  •44 forks in mackelab/LDNS•2626 stars in mackelab/LDNS•00 issues in mackelab/LDNS•00 pull requests in mackelab/LDNS•Updated Jan 30, 2026Jan 30, 2026

• smc_rnns

  Public
  Code accompanying Inferring stochastic low-rank RNNs from neural data. @matthijspals

  Jupyter Notebook

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  Apache License 2.0

  •66 forks in mackelab/smc_rnns•2727 stars in mackelab/smc_rnns•00 issues in mackelab/smc_rnns•00 pull requests in mackelab/smc_rnns•Updated Jan 26, 2026Jan 26, 2026

• neuralgbi

  Public
  Richard @rdgao & Michael @michaeldeistler: using neural network-based regression and density estimation for Generalized Bayesian Inference

  Jupyter Notebook

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  MIT License

  •22 forks in mackelab/neuralgbi•1111 stars in mackelab/neuralgbi•00 issues in mackelab/neuralgbi•00 pull requests in mackelab/neuralgbi•Updated Dec 19, 2025Dec 19, 2025

• neuralgbi_diffusion

  Public
  Richard @rdgao & Michael @michaeldeistler: using neural network-based regression and density estimation for Generalized Bayesian Inference

  Jupyter Notebook

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  MIT License

  •22 forks in mackelab/neuralgbi_diffusion•11 star in mackelab/neuralgbi_diffusion•00 issues in mackelab/neuralgbi_diffusion•00 pull requests in mackelab/neuralgbi_diffusion•Updated Dec 13, 2025Dec 13, 2025

• neuro_rnn_training

  Public
  some minimal examples of RNN training in neuroscience

  Jupyter Notebook

  •00 forks in mackelab/neuro_rnn_training•00 stars in mackelab/neuro_rnn_training•00 issues in mackelab/neuro_rnn_training•00 pull requests in mackelab/neuro_rnn_training•Updated Oct 30, 2025Oct 30, 2025

• automind

  Public
  Automated Model Inference from Neural Dynamics

  Jupyter Notebook

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  Apache License 2.0

  •77 forks in mackelab/automind•1919 stars in mackelab/automind•00 issues in mackelab/automind•11 pull request in mackelab/automind•Updated Sep 10, 2025Sep 10, 2025

• sbi-icann

  Public
  Interactive SBI tutorial at ICANN, by @michaeldeistler

  Jupyter Notebook

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  MIT License

  •00 forks in mackelab/sbi-icann•00 stars in mackelab/sbi-icann•00 issues in mackelab/sbi-icann•00 pull requests in mackelab/sbi-icann•Updated Sep 9, 2025Sep 9, 2025

• jaxley_experiments

  Public
  Repository to reproduce results of `Differentiable simulation enables large-scale training of biophysical models of neural dynamics`.

  Jupyter Notebook

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  MIT License

  •22 forks in mackelab/jaxley_experiments•77 stars in mackelab/jaxley_experiments•11 issue in mackelab/jaxley_experiments•00 pull requests in mackelab/jaxley_experiments•Updated Aug 28, 2025Aug 28, 2025

• sequence-memory

  Public
  Code for Liebe et al. "Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks", code by Matthijs Pals (@mat…

  Jupyter Notebook

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  MIT License

  •11 fork in mackelab/sequence-memory•33 stars in mackelab/sequence-memory•00 issues in mackelab/sequence-memory•00 pull requests in mackelab/sequence-memory•Updated Jul 2, 2025Jul 2, 2025

• simformer

  Public
  Combination of transformers and diffusion models for flexible all-in-one simulation-based inference

  Jupyter Notebook

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  MIT License

  •1414 forks in mackelab/simformer•8787 stars in mackelab/simformer•44 issues in mackelab/simformer•00 pull requests in mackelab/simformer•Updated Jun 20, 2025Jun 20, 2025

• preprocessing-ice-data

  Public
  Simulation-Based Inference of Surface Accumulation and Basal Melt Rates of an Antarctic Ice Shelf from Isochronal Layers

  Python

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  GNU Affero General Public License v3.0

  •00 forks in mackelab/preprocessing-ice-data•11 star in mackelab/preprocessing-ice-data•00 issues in mackelab/preprocessing-ice-data•00 pull requests in mackelab/preprocessing-ice-data•Updated Jun 20, 2025Jun 20, 2025

• sbi-ice

  Public
  Simulation-Based Inference of Surface Accumulation and Basal Melt Rates of an Antarctic Ice Shelf from Isochronal Layers

  Python

  •

  GNU Affero General Public License v3.0

  •00 forks in mackelab/sbi-ice•44 stars in mackelab/sbi-ice•33 issues in mackelab/sbi-ice•00 pull requests in mackelab/sbi-ice•Updated Jun 20, 2025Jun 20, 2025

• figure_tutorial

  Public
  Tutorial for making figures, written by Michael @michaeldeistler

  Jupyter Notebook

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  MIT License

  •11 fork in mackelab/figure_tutorial•1212 stars in mackelab/figure_tutorial•00 issues in mackelab/figure_tutorial•00 pull requests in mackelab/figure_tutorial•Updated May 15, 2025May 15, 2025

• pyloric

  Public
  Simulator of the pyloric network in cython.

  pythonsimulatorcython+ 2

  pythonsimulatorcythonpyloric-networkstomatogastric-ganglion

  Jupyter Notebook

  •

  MIT License

  •11 fork in mackelab/pyloric•44 stars in mackelab/pyloric•33 issues in mackelab/pyloric•11 pull request in mackelab/pyloric•Updated May 8, 2025May 8, 2025

• neural_timeseries_diffusion

  Public
  This repository contains research code for the paper "Generating realistic neurophysiological time series with denoising diffusion probabilistic models". @jsvet…

  Python

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  MIT License

  •1616 forks in mackelab/neural_timeseries_diffusion•9595 stars in mackelab/neural_timeseries_diffusion•11 issue in mackelab/neural_timeseries_diffusion•00 pull requests in mackelab/neural_timeseries_diffusion•Updated May 2, 2025May 2, 2025