GENPAT (Italian National Reference Centre for WGS of microbial pathogens)
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cohesive-llm-benchmark
Publicwiki-engine
PubliccgDist
PublicUltra-fast SNP/indel-level distance calculator for core genome MLST analysis in bacterial genomicschewcall
PublicFast cgMLST/wgMLST allele caller with SIMD Smith-Waterman scoring (parasail) and an offline schema-side minimizer-overlap audit. 10.7–22.3× faster than chewBBAC…cohesive-llm
PublicSelf-hostable AI platform that generates Nextflow DSL2 pipelines for the cohesive-ngsmanager frameworkohe-rs
PublicUltra-fast one-hot encoding for bioinformatics and ML, powered by Rust + CUDA. Built for cgMLST allele profiles and large-scale categorical data.dist2mst-rs
PublicUltra-fast Minimum Spanning Tree construction from distance matrices — Rust rewrite of dist2mst (~900x faster)dist2mst
PublicHigh-performance Minimum Spanning Tree construction from distance matrices with Numba accelerationcgmlst-dists-py
PublicHigh-performance pairwise Hamming distance calculator for cgMLST data with GPU accelerationfreemap
PublicTrajectory-based long-read aligner with DP-free CIGAR generationchewBBACA
Publiccoreguard
PublicCoreGuard - SNP comparison visualization tool for multi-pipeline genomic analysis. Compare SNP calls from different variant calling pipelines (Snippy, CFSAN, et…cohesive-ngsmanager-cli
PublicGenomicBasedRegression
Publicspread
PublicProject based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metad…cohesive
PublicDocker-based COHESIVE Information System (CIS) for One Health surveillance, outbreak investigation, and risk assessment of zoonoses.cohesive-auspice
Publiccohesive-cmdbuild
Publiccohesive-zuul
Publiccohesive-bioinfotools2
Publiccohesive-auspice-server
Publiccampy-ml
PubliccgDist-surveillance
Publiccohesive-ngsmanager
Publicmkdocs-packages
Publicjstree
Public
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