Repositories list

• KonfAI

  Public
  A simple and flexible deep learning framework based on PyTorch and YAML configuration files.

  deep-learning

  deep-learning

  Python

  •

  Apache License 2.0

  •33 forks•1616 stars•00 issues•4242 pull requests•Updated Oct 1, 2026Oct 1, 2026

• ngff-zarr

  Public
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

  pythonmedicaldask+ 4

  pythonmedicaldaskmicroscopyimagingome-zarrome-zarr-converter

  Python

  •

  MIT License

  •2525 forks•7373 stars•1414 issues•1111 pull requests•Updated Oct 1, 2026Oct 1, 2026

• fiff

  Public
  Present TIFF files as a zarrita.js Zarr store following the NGFF OME-Zarr data model

  javascripttypescripttiff+ 3

  javascripttypescripttiffngffome-zarrome-ngff

  TypeScript

  •

  MIT License

  •00 forks•22 stars•11 issue•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• worker-pool

  Public
  A Web Worker pool with bounded concurrency, plus a companion package that accelerates zarrita codec operations on Web Workers.

  javascripttypescriptweb-worker+ 4

  javascripttypescriptweb-workerthread-poolzarrp-queueitk-wasm

  TypeScript

  •

  MIT License

  •22 forks•55 stars•00 issues•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• SlicerOMEZarr

  Public
  3D Slicer extension to open OME-Zarr (OME-NGFF) images, built on ngff-zarr

  3d-slicer-extension

  3d-slicer-extension

  Python

  •

  MIT License

  •11 fork•33 stars•11 issue•00 pull requests•Updated Sep 23, 2026Sep 23, 2026

• impact-reg-ooc-demo

  Public
  Out-of-core multimodal registration with KonfAI and impact-reg: elastix, FireANTs, ConvexAdam and IMPACT feature losses on the APEX / BRAIN CONNECTS hackathon d…

  neuroscienceregistrationneuroimaging+ 5

  neuroscienceregistrationneuroimagingout-of-coremultimodalneuroglancerfsleyesome-zarr

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 16, 2026Sep 16, 2026

• ImpactLoss

  Public
  IMPACT Reg: A Generic Semantic Loss for Multimodal Image Registration

  Python

  •

  Apache License 2.0

  •22 forks•00 stars•00 issues•11 pull request•Updated Sep 8, 2026Sep 8, 2026

• nd-image-codecs

  Public
  Composable Zarr v3 codecs for ND scientific images.

  Rust

  •

  MIT License

  •11 fork•66 stars•00 issues•22 pull requests•Updated Sep 3, 2026Sep 3, 2026

• rumcodecs

  Public archive
  numcodecs.js reimplemented in Rust

  rustwebassemblyzarr+ 1

  rustwebassemblyzarrnumcodecs

  TypeScript

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Aug 7, 2026Aug 7, 2026

• ome-zarr-rfc4-validation

  Public
  OME-NGFF RFC-4 (axis anatomical orientation) validator + conformance suite. Data: HF fideus-labs/ome-ngff-rfc4-orientation-validation.

  Python

  •00 forks•33 stars•00 issues•00 pull requests•Updated Aug 4, 2026Aug 4, 2026

• python-wasm-parallelism

  Public
  Parallel processing in Pyodide/Jupyterlite with Dask or multiprocessing

  pythonmultiprocessingwebassembly+ 6

  pythonmultiprocessingwebassemblywasmparallelismdaskwebworkerspyodidejupyterlite

  TypeScript

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Jul 17, 2026Jul 17, 2026

• fidnii

  Public
  Render OME-Zarr images in NiiVue with progressive multi-resolution loading.

  TypeScript

  •

  MIT License

  •11 fork•99 stars•3636 issues•44 pull requests•Updated Jun 25, 2026Jun 25, 2026

• numcodecs.js

  Public
  Buffer compression and transformation codecs

  JavaScript

  •

  MIT License

  •1010 forks•00 stars•00 issues•00 pull requests•Updated Feb 25, 2026Feb 25, 2026

• ome-ngff-scientific-ai

  Public
  Scientific AI and the Future of OME-NGFF: Intelligent Bioimage Analysis Workflows

  bioimage-analysisbioimage-toolsscientific-ai+ 2

  bioimage-analysisbioimage-toolsscientific-aiome-zarrome-ngff

  Dockerfile

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Nov 11, 2025Nov 11, 2025

• .github

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 19, 2025Sep 19, 2025

• scientific-ai-omezarr-tutorial

  Public
  Scientific AI and the Future of OME-Zarr: Building Intelligent Bioimage Analysis Workflows

  bioimagingbioimage-analysiszarr+ 3

  bioimagingbioimage-analysiszarrscientific-aiome-zarrmcp-server

  Dockerfile

  •

  MIT License

  •11 fork•33 stars•00 issues•00 pull requests•Updated Sep 18, 2025Sep 18, 2025