Repositories list

• cytoscape-manual

  Public
  Markdown version of Cytoscape manual

  Creative Commons Zero v1.0 Universal

  •23•11•0•0•Updated Dec 3, 2024Dec 3, 2024

• cytoscape-web

  Public
  TypeScript

  •

  MIT License

  •7•6•1•1•Updated Dec 3, 2024Dec 3, 2024

• web-cytoscape-manual

  Public
  Holds documentation for Cytoscape Web

  Makefile

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• iregulon-webapp

  Public
  JavaScript

  •

  MIT License

  •0•1•14•0•Updated Dec 3, 2024Dec 3, 2024

• cytoscape.js

  Public
  Graph theory (network) library for visualisation and analysis

  networkcytoscapejsjavascript+ 3analysisvisualisationgraph-theory

  JavaScript

  •

  MIT License

  •1.6k•10k•15•3•Updated Dec 2, 2024Dec 2, 2024

• cytoscape-pmcfigurebot

  Public
  Query figures indexed by PubMed Central and collect metadata

  R

  •

  Creative Commons Zero v1.0 Universal

  •4•1•0•0•Updated Dec 1, 2024Dec 1, 2024

• cytoscape-web-app-examples

  Public
  (Experimental) Example apps for Cytoscape Web

  TypeScript

  •

  MIT License

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• cytoscape.js-elk

  Public
  The ELK layout algorithm adapter for Cytoscape.js

  JavaScript

  •

  MIT License

  •27•45•0•0•Updated Nov 26, 2024Nov 26, 2024

• cytoscape.js-dagre

  Public
  The Dagre layout for DAGs and trees for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •82•253•0•0•Updated Nov 22, 2024Nov 22, 2024

• cytoscape.js-cxtmenu

  Public
  Context menu for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •83•167•1•0•Updated Nov 22, 2024Nov 22, 2024

• cytoscape.js-cola

  Public
  The Cola.js physics simulation layout for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •67•151•0•1•Updated Nov 22, 2024Nov 22, 2024

• cytoscape.github.com

  Public
  Cytoscape org web site.

  HTML

  •16•22•1•0•Updated Nov 21, 2024Nov 21, 2024

• cytoscape-home

  Public
  JavaScript

  •

  MIT License

  •1•1•5•0•Updated Nov 21, 2024Nov 21, 2024

• cytoscape-support

  Public
  Cytoscape 3 support bundles.

  Java

  •5•0•0•1•Updated Nov 18, 2024Nov 18, 2024

• cytoscape-parent

  Public
  Cytoscape 3.x parent pom file.

  5•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• cytoscape-impl

  Public
  Cytoscape 3 implementation bundles.

  Java

  •

  GNU Lesser General Public License v2.1

  •42•36•0•0•Updated Nov 18, 2024Nov 18, 2024

• cytoscape-gui-distribution

  Public
  Cytoscape 3 desktop version.

  Java

  •18•17•0•3•Updated Nov 18, 2024Nov 18, 2024

• cytoscape

  Public
  Cytoscape: an open source platform for network analysis and visualization

  Shell

  •139•582•0•1•Updated Nov 18, 2024Nov 18, 2024

• cytoscape-app-template

  Public
  Cytoscape 3 project files for App developers.

  4•1•0•0•Updated Nov 18, 2024Nov 18, 2024

• cytoscape-api

  Public
  Cytoscape 3 API bundles.

  Java

  •

  GNU Lesser General Public License v2.1

  •34•22•0•0•Updated Nov 18, 2024Nov 18, 2024

• py4cytoscape

  Public
  Python library for calling Cytoscape Automation via CyREST

  workflowworkflow-automationpython+ 3cytoscapepy2cytoscapecytoscape-interfaces

  Python

  •

  Other

  •15•72•25•1•Updated Nov 14, 2024Nov 14, 2024

• cytoscape.js-klay

  Public
  The Klay layout algorithm for Cytoscape.js

  JavaScript

  •

  MIT License

  •41•87•0•1•Updated Nov 14, 2024Nov 14, 2024

• cytoscape.js-pdf-export

  Public
  PDF export extension for Cytoscape.js

  JavaScript

  •

  MIT License

  •0•0•2•0•Updated Nov 7, 2024Nov 7, 2024

• cytoscape-tutorials

  Public
  Collection of modular Cytoscape tutorials for online presentation using reveal.js

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •118•315•26•13•Updated Nov 7, 2024Nov 7, 2024

• network-ptm-integration

  Public
  This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).

  R

  •

  MIT License

  •0•0•5•0•Updated Nov 4, 2024Nov 4, 2024

• RCy3

  Public
  New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

  R

  •

  MIT License

  •20•52•7•0•Updated Oct 30, 2024Oct 30, 2024

• cytoscape.js-popper

  Public
  A wrapper for Popper.js that lets you position divs relative to Cytoscape elements

  JavaScript

  •

  MIT License

  •23•97•0•2•Updated Oct 30, 2024Oct 30, 2024

• js4cytoscape

  Public
  JavaScript library for calling Cytoscape Automation via CyREST

  JavaScript

  •

  MIT License

  •4•3•1•0•Updated Oct 29, 2024Oct 29, 2024

• cytoscape.js-compound-drag-and-drop

  Public
  Compound node drag-and-drop UI for adding and removing children

  JavaScript

  •

  MIT License

  •16•33•0•0•Updated Oct 29, 2024Oct 29, 2024

• cytoscape.js-automove

  Public
  An extension for Cytoscape.js that automatically updates node positions based on specified rules

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •11•33•0•0•Updated Oct 28, 2024Oct 28, 2024