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    • cosmo

      Public
      Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
      C++
      1753132Updated Mar 12, 2024Mar 12, 2024
    • tclap

      Public
      Copy of now defunct https://github.com/eile/tclap with latest commit used by VARI-merge
      C++
      0000Updated Jul 31, 2020Jul 31, 2020
    • sdsl-lite

      Public
      Succinct Data Structure Library 2.0
      C++
      355000Updated Jun 23, 2016Jun 23, 2016
    • stxxl

      Public
      STXXL: Standard Template Library for Extra Large Data Sets
      C++
      98000Updated Jun 23, 2016Jun 23, 2016
    • e_coli6

      Public
      Convenience repo for a collection of 6 reference genomes for E. coli strains.
      Shell
      1000Updated Jun 19, 2016Jun 19, 2016
    • Issue repository for Cosmo (separate until we can transfer issues between repositories nicely - ignore code)
      C++
      00820Updated Mar 7, 2016Mar 7, 2016
    • CSS
      0000Updated Mar 7, 2016Mar 7, 2016
    • KMC

      Public
      Fast and frugal disk based k-mer counter
      C++
      80100Updated Feb 26, 2016Feb 26, 2016