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@cosmo-team Cosmo

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    8 repositories

    • cosmo

      Public
      Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
      C++
      •
      GNU General Public License v3.0
      •17•53•13•2•Updated Mar 12, 2024Mar 12, 2024

    • tclap

      Public
      Copy of now defunct https://github.com/eile/tclap with latest commit used by VARI-merge
      C++
      •
      MIT License
      •0•0•0•0•Updated Jul 31, 2020Jul 31, 2020

    • sdsl-lite

      Public
      Succinct Data Structure Library 2.0
      C++
      •
      Other
      •355•0•0•0•Updated Jun 23, 2016Jun 23, 2016

    • stxxl

      Public
      STXXL: Standard Template Library for Extra Large Data Sets
      C++
      •
      Boost Software License 1.0
      •98•0•0•0•Updated Jun 23, 2016Jun 23, 2016

    • e_coli6

      Public
      Convenience repo for a collection of 6 reference genomes for E. coli strains.
      Shell
      •1•0•0•0•Updated Jun 19, 2016Jun 19, 2016

    • cosmo-issues

      Public
      Issue repository for Cosmo (separate until we can transfer issues between repositories nicely - ignore code)
      C++
      •
      GNU General Public License v3.0
      •0•0•82•0•Updated Mar 7, 2016Mar 7, 2016

    • cosmo-team.github.io

      Public
      CSS
      •0•0•0•0•Updated Mar 7, 2016Mar 7, 2016

    • KMC

      Public
      Fast and frugal disk based k-mer counter
      C++
      •80•1•0•0•Updated Feb 26, 2016Feb 26, 2016