Repositories list

• lpne

  Public
  LFP feature extraction and prediction pipeline

  Python

  •

  MIT License

  •4•3•2•0•Updated Sep 22, 2025Sep 22, 2025

• VMD-and-NAMD-Connexin-Protein-Simulation-Protocol

  Public
  This document provides a streamlined workflow for running molecular dynamics (MD) simulations using VMD (Visual Molecular Dynamics) and NAMD (Nanoscale Molecular Dynamics). It is intended as a practical guide and reproducible framework for researchers, students, and developers working in computational chemistry, biophysics, or structural biology.

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Aug 15, 2025Aug 15, 2025

• redcliff-s-hypothesizing-dynamic-causal-graphs

  Public
  Code corresponding to ICML 2025 paper "Generating Hypotheses of Dynamic Causal Graphs in Neuroscience: Leveraging Generative Factor Models of Observed Time Series"

  Python

  •

  MIT License

  •3•9•3•0•Updated May 28, 2025May 28, 2025

• Social_Projections

  Public
  Original code and model parameters for social network projections from the Social Appetitive Brain State paper.

  Python

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• OptoLinCx

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• FETCH

  Public
  Pipeline for processing flow cytometry .fcs files to get FETCH score

  Python

  •2•0•0•0•Updated Jul 21, 2024Jul 21, 2024

• Anxiety

  Public
  The collection of all code for the Cpne Anxiety paper.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• lpne-data-analysis

  Public
  HTML

  •0•2•2•2•Updated Nov 6, 2023Nov 6, 2023

• dCSFA-NMF

  Public
  dCSFA-NMF contains pytorch code for Supervised Autoencoders Learn Robust Joint Factor Models of Neural Activity

  HTML

  •2•5•0•0•Updated Sep 20, 2022Sep 20, 2022

• neuro-pipeline

  Public
  This is a wiki page

  MATLAB

  •5•1•0•0•Updated Mar 11, 2021Mar 11, 2021

• encodedSupervision

  Public
  Jupyter Notebook

  •3•6•1•0•Updated May 18, 2020May 18, 2020