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@brain-bbqs BRAIN BBQS

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    42 repositories

    • data-ingest-runner-tracking

      Public
      A DataLad dataset tracking provenance of data ingest runner actions.
      0•1•0•0•Updated Oct 17, 2026Oct 17, 2026

    • standards_paper

      Public
      Repo used to develop a paper on the standards ecosystem and recommendations for BBQS
      Python
      •0•0•0•1•Updated Oct 17, 2026Oct 17, 2026

    • dandi-cli-docker

      Public
      Containerized version of DANDI CLI to download/upload files between EMBER / DANDI and Pennsieve
      Shell
      •2•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • bbqs-web-components

      Public
      Common components shared across web apps for this organization.
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2026Oct 14, 2026

    • ember-rave-visualizer

      Public
      Testing.
      TypeScript
      •
      MIT License
      •0•1•0•0•Updated Oct 13, 2026Oct 13, 2026

    • bbqs-web-app-template

      Public template
      A generic template for recommend static web apps.
      TypeScript
      •
      MIT License
      •0•1•0•0•Updated Oct 13, 2026Oct 13, 2026

    • data-ingest-task-force

      Public
      Data ingest repository for the Kemere lab.
      Python
      •0•2•5•1•Updated Oct 13, 2026Oct 13, 2026

    • bbqs-app

      Public
      Brain Behavior Quantification & Synchronization (BBQS) Knowledge Graph Main Website
      TypeScript
      •2•4•17•2•Updated Oct 13, 2026Oct 13, 2026

    • encoding-helper

      Public
      A web app for education and comparison of video encodings.
      TypeScript
      •
      MIT License
      •0•1•1•0•Updated Oct 7, 2026Oct 7, 2026

    • bbqs-uploader

      Public
      A web app for BBQS teams to easily upload files to an existing Dandiset on the EMBER Archive through a simple drag-and-drop interface.
      TypeScript
      •
      MIT License
      •1•1•0•0•Updated Oct 6, 2026Oct 6, 2026

    • bbqs-sink

      Public
      This is a central repository for the BBQS consortium to use to consolidate code snippets and scripts that might be 'generally useful' for others.
      Python
      •
      MIT License
      •0•2•0•1•Updated Oct 5, 2026Oct 5, 2026

    • hearth-landing-page

      Public
      The main landing page for the HEARTH data ecosystem.
      TypeScript
      •0•1•0•0•Updated Oct 2, 2026Oct 2, 2026

    • study-template

      Public template
      Template for EMBER study, organized as a BIDS study, for data ingest etc
      Apache License 2.0
      •2•0•1•0•Updated Oct 2, 2026Oct 2, 2026

    • clip-extractor

      Public
      A web app for selecting a clip (a snippet range or a single frame) from a video and saving it locally or uploading directly to the EMBER Archive.
      TypeScript
      •
      MIT License
      •0•1•3•0•Updated Oct 2, 2026Oct 2, 2026

    • knowledge-graph

      Public
      HTML
      •0•0•0•0•Updated Sep 21, 2026Sep 21, 2026

    • dynestyx

      Public
      Probabilistic programming for dynamical systems! Supports models with NumPyro, deterministic & stochastic systems, discrete- and continuous-time systems, and mo…
      Python
      •
      Apache License 2.0
      •14•1•0•0•Updated Sep 14, 2026Sep 14, 2026

    • hearth-redirect

      Public
      A tiny shim for bare redirects to HEARTH.
      HTML
      •0•1•0•0•Updated Sep 1, 2026Sep 1, 2026

    • bbqs-app-sandbox

      Public
      Testing Environment for BBQS Sandbox
      TypeScript
      •0•1•0•0•Updated Aug 19, 2026Aug 19, 2026

    • bbqs-qa-workbench

      Public
      This is a draft of an application to assist with manual checking of extracted project information to be structured and ingested into BBQS knowledge base
      JavaScript
      •0•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • ingest-tracker

      Public
      The centralized tracker of progress made towards the data and workflow standardization and upload process.
      0•1•41•0•Updated Jul 27, 2026Jul 27, 2026

    • behavioral-annotation-task-force

      Public
      The main official repository for all things related to the Behavioral Annotation Task Force of the BBQS.
      0•2•14•0•Updated Jul 20, 2026Jul 20, 2026

    • .github

      Public
      0•0•0•0•Updated May 13, 2026May 13, 2026

    • reproforce

      Public
      A place for the Task Force for Reproducible and rigorous science to consolidate their public efforts.
      Jupyter Notebook
      •0•1•0•1•Updated May 8, 2026May 8, 2026

    • bbqs-helpdesk

      Public
      A general helpdesk for any and all questions.
      0•1•0•0•Updated Apr 24, 2026Apr 24, 2026

    • ember-pennsieve-helpdesk

      Public
      A centralized public location to ask questions and propose ideas about the EMBER workspace on Pennsieve.
      0•1•0•0•Updated Apr 15, 2026Apr 15, 2026

    • neurodocker

      Public
      Generate custom Docker and Singularity images, and minimize existing containers
      Python
      •
      Apache License 2.0
      •99•1•0•0•Updated Feb 15, 2026Feb 15, 2026

    • brain-bbqs.github.io

      Public archive
      Website for Brain Behavior Quantification and Synchronization
      behaviorbrainconsortium
      behaviorbrainconsortiumnih-brain-initiative
      HTML
      •
      MIT License
      •8•0•12•0•Updated Jan 31, 2026Jan 31, 2026

    • birdnet

      Public
      A Python library for identifying bird species by their sounds.
      Python
      •
      MIT License
      •19•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • simba

      Public
      SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
      Python
      •
      Other
      •176•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • DeepSqueak

      Public
      DeepSqueak v3: Using Machine Vision to Accelerate Bioacoustics Research
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •105•0•0•0•Updated Nov 18, 2025Nov 18, 2025
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