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    38 repositories

    • parallel-lensless-dataset

      Public
      Python
      •0•5•0•0•Updated Mar 29, 2026Mar 29, 2026

    • EncodingInformation

      Public
      Information-Driven Design of Imaging Systems
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •8•21•1•0•Updated Mar 26, 2026Mar 26, 2026

    • EncodingInformationWebsite

      Public
      Source code for EncodingInformation project website
      JavaScript
      •0•1•0•0•Updated Mar 2, 2026Mar 2, 2026

    • BSCCM

      Public
      Berkeley Single Cell Computational Microscopy dataset
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •4•18•0•0•Updated Oct 27, 2025Oct 27, 2025

    • SpeckleFlowSIM

      Public
      Code and example notebooks for "Speckle Flow SIM - Dynamic Structured Illumination Microscopy with a Neural Space-time Model"
      Jupyter Notebook
      •
      Other
      •1•1•0•0•Updated Oct 5, 2025Oct 5, 2025

    • BRIEF

      Public
      1. Y. Xue, D. Ren, L. Waller, Three-dimensional bi-functional refractive index and fluorescence microscopy (BRIEF). arXiv [physics.optics] (2020), (available at…
      Jupyter Notebook
      •
      MIT License
      •1•4•0•0•Updated Sep 9, 2022Sep 9, 2022

    • UDN

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•30•1•0•Updated Jun 15, 2022Jun 15, 2022

    • Miniscope3D

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•21•2•0•Updated Apr 27, 2022Apr 27, 2022

    • MultiWienerNet

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •7•52•2•0•Updated Apr 15, 2022Apr 15, 2022

    • multi-slice

      Public
      MATLAB
      •
      MIT License
      •11•23•1•0•Updated Feb 2, 2022Feb 2, 2022

    • 3D-MAP

      Public
      Simulation, hardware I/O GUI, and data processing code for 3D-MAP
      0•0•0•0•Updated Nov 23, 2021Nov 23, 2021

    • DPC_withAberrationCorrection

      Public
      M. Chen, Z. F. Phillips, and L. Waller, Quantitative differential phase contrast (DPC) microscopy with computational aberration correction, Opt. Express 26(25),…
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •13•36•0•0•Updated Oct 12, 2021Oct 12, 2021

    • LenslessLearning

      Public
      Code for Lensless Learning Paper
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •19•75•4•1•Updated Sep 9, 2021Sep 9, 2021

    • FPM

      Public
      MATLAB
      •
      MIT License
      •15•55•1•0•Updated Jun 29, 2021Jun 29, 2021

    • multi-layer-born

      Public
      Python
      •
      MIT License
      •8•30•1•0•Updated Jun 10, 2021Jun 10, 2021

    • DeepAutofocus

      Public
      Single-shot autofocus on microscopes using deep learning
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •11•42•3•0•Updated Jan 21, 2021Jan 21, 2021

    • DiffuserCam

      Public
      DiffuserCam Processing Code
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •34•148•10•0•Updated Nov 7, 2020Nov 7, 2020

    • SpectralDiffuserCam

      Public
      Code and project page for Spectral DiffuserCam
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •9•30•1•0•Updated Oct 1, 2020Oct 1, 2020

    • 3DQuantitativeDPC

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•15•0•0•Updated Apr 9, 2020Apr 9, 2020

    • 2D_high_content_speckle_SIM

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •4•13•1•0•Updated Jun 10, 2019Jun 10, 2019

    • Pattern_estimation_SIMS

      Public
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•0•0•Updated Jun 10, 2019Jun 10, 2019

    • PytorchComplexOps

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Apr 16, 2019Apr 16, 2019

    • zStageCode

      Public archive
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2019Apr 10, 2019

    • CompCellScopeAndroid

      Public archive
      Latest development version of CellScope Android app and relevent code
      Java
      •
      Other
      •1•1•0•0•Updated Apr 10, 2019Apr 10, 2019

    • CompCellScopeHardware

      Public archive
      Rich Text Format
      •
      Other
      •0•0•0•0•Updated Apr 10, 2019Apr 10, 2019

    • NOVOCGH

      Public
      NOVO-CGH algorithm implemented in Matlab for 3D CGH
      MATLAB
      •
      Other
      •7•25•3•0•Updated Mar 19, 2019Mar 19, 2019

    • DPC

      Public archive
      MATLAB
      •4•7•0•0•Updated Mar 12, 2019Mar 12, 2019

    • DiffuserCam-Tutorial

      Public
      Build-your-own DiffuserCam tutorial
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •25•69•1•1•Updated Dec 13, 2018Dec 13, 2018

    • Angle_SelfCalibration

      Public
      Self calibration algorithms for illumination angle recovery.
      MATLAB
      •2•23•0•0•Updated Oct 29, 2018Oct 29, 2018

    • osajnl_bst

      Public archive
      0•0•0•0•Updated May 31, 2017May 31, 2017
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