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    24 repositories

    • RPi4_behavior_boxes

      Public
      code for the behavior boxes running on the Raspberry Pi 4
      Python
      •7•7•0•2•Updated Mar 24, 2026Mar 24, 2026

    • generalized_contrastive_PCA

      Public
      Method to find contrastive dimensions between experimental conditions
      neurosciencedimensionality-reductiondata-analysis
      neurosciencedimensionality-reductiondata-analysiscontrastiveomics-analysis
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•28•0•0•Updated Mar 22, 2026Mar 22, 2026

    • neurokairos

      Public
      Plays IRIG and Unix timecodes on the GPIO pins of a Raspberry Pi 4B
      Python
      •
      MIT License
      •0•4•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Miniscope-DAQ-Cypress-firmware

      Public
      DAQ firmware for V3 and V4 Miniscope platforms
      C
      •11•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • RPi4_behavior_boxes_hardware

      Public
      Codex-based refactoring of the RPi behavior box hardware code
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 16, 2026Mar 16, 2026

    • RPi4_behavior_tasks

      Public
      behavioral tasks for the RPi4 behavior boxes
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 11, 2026Mar 11, 2026

    • phy

      Public
      phy: interactive visualization and manual spike sorting of large-scale ephys data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •186•0•0•0•Updated Feb 24, 2026Feb 24, 2026

    • neurokairos-pynapple

      Public
      Uses IRIG timecodes to synchronize pynapple objects to UTC time signals from GPS satellites
      Python
      •0•1•0•0•Updated Feb 20, 2026Feb 20, 2026

    • pynacollada

      Public
      pynapple collaborative data analysis (high level python scripts) :tropical_drink:
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •15•0•0•0•Updated Feb 20, 2026Feb 20, 2026

    • pynapple

      Public
      PYthon Neural Analysis Package :pineapple:
      Python
      •
      MIT License
      •75•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • Miniscope-v4

      Public
      All things Miniscope v4
      Prolog
      •
      GNU General Public License v3.0
      •32•0•0•0•Updated Feb 14, 2026Feb 14, 2026

    • RPi4Cam

      Public
      A highly flexible, scalable, video recording system for behavioral neuroscience with RPi4B, PiCam2, LAN
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • analog_SWR_detection

      Public
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 24, 2025Jan 24, 2025

    • methods_class

      Public
      "Approaches to Study Neural Circuits" course
      MATLAB
      •10•65•0•0•Updated Dec 13, 2024Dec 13, 2024

    • Sucrose_Self-Administration

      Public
      0•0•0•0•Updated May 5, 2024May 5, 2024

    • fast_CCG

      Public
      This is a Python program for calculating cross-correlograms quickly using compiled C code
      C
      •0•0•1•0•Updated Jul 2, 2023Jul 2, 2023

    • open_field_DLC_analysis

      Public
      MATLAB
      •0•0•0•0•Updated Mar 20, 2023Mar 20, 2023

    • auto_scripts

      Public
      scripts for automating data preprocessing
      Shell
      •1•3•0•0•Updated Jan 14, 2022Jan 14, 2022

    • rpg

      Public
      C
      •7•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • behavior_box

      Public
      Matlab and arduino code for our mouse behavior boxes
      MATLAB
      •0•2•0•0•Updated Jan 23, 2021Jan 23, 2021

    • autopilot

      Public
      Distributed behavioral experiments
      Python
      •
      Mozilla Public License 2.0
      •25•1•0•0•Updated Dec 1, 2020Dec 1, 2020

    • Kilosort2Wrapper

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •3•4•0•0•Updated Mar 9, 2020Mar 9, 2020

    • 3D_printed_syringe_pump

      Public
      plans for our 3D printed syringe pump design
      0•0•0•0•Updated Mar 18, 2019Mar 18, 2019

    • intan_neurosuite

      Public
      A modified version of the Intan data acquisition software that is compatible with Neurosuite
      C++
      •1•2•0•0•Updated May 15, 2018May 15, 2018