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    23 repositories

    • PowerPixelsPipeline

      Public
      Python
      •
      GNU General Public License v3.0
      •5•32•0•0•Updated Feb 28, 2026Feb 28, 2026

    • LinearTrack_Code

      Public
      Repository of analysis code for linear probe + single cell recordings in CA1
      MATLAB
      •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

    • pipeline_MultiSensoryVR

      Public
      Preprocessing pipeline for Neuropixel recordings
      Python
      •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • pipeline_2p

      Public
      Preprocessing pipeline for 2p imaging data, VR behaviour data and synchronization between the two.
      Jupyter Notebook
      •1•0•1•1•Updated Oct 20, 2023Oct 20, 2023

    • pipeline_vsdi

      Public
      Preprocessing tools for voltage sensitive dye signal data
      Jupyter Notebook
      •
      MIT License
      •1•1•2•1•Updated Aug 31, 2023Aug 31, 2023

    • DeepLabCut

      Public
      Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals
      Python
      •
      GNU Lesser General Public License v3.0
      •1.8k•0•0•0•Updated Mar 2, 2022Mar 2, 2022

    • BasinsProbe_Code

      Public
      MATLAB
      •0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • PythonPlugin

      Public
      A plugin for open-ephys enabling the insertion of Cython into the open-ephys signal chain.
      Cython
      •16•11•13•0•Updated Dec 22, 2021Dec 22, 2021

    • HybridDrive_method_paper

      Public
      analysis code for the Hybrid Drive methods paper
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 21, 2021Oct 21, 2021

    • assembly_sequences

      Public
      Jupyter Notebook
      •4•0•0•0•Updated May 28, 2020May 28, 2020

    • github-classroom-for-students

      Public
      74•1•0•0•Updated Apr 19, 2020Apr 19, 2020

    • neuroseries

      Public
      Python
      •
      GNU General Public License v3.0
      •3•13•1•1•Updated Nov 7, 2019Nov 7, 2019

    • TStoolbox

      Public
      A Matlab Toolbox to analyze neuronal data
      MATLAB
      •9•0•0•0•Updated Jul 8, 2019Jul 8, 2019

    • matlab_examples

      Public
      Examples of Matlab code usage, for instructional purposes mostly
      MATLAB
      •0•0•0•0•Updated Jul 4, 2019Jul 4, 2019

    • Hex-Snap

      Public
      An automated analysis pipeline for the Hex-Maze
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jul 3, 2019Jul 3, 2019

    • analysis-tools

      Public
      Code for reading data saved by the Open Ephys GUI
      C
      •176•0•0•0•Updated Jun 10, 2019Jun 10, 2019

    • score

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•8•0•Updated Nov 18, 2018Nov 18, 2018

    • spot

      Public
      Spike Pattern Optimal Transport
      Jupyter Notebook
      •3•0•0•0•Updated Jul 24, 2018Jul 24, 2018

    • ratrack

      Public
      rat position tracking
      Python
      •3•0•0•0•Updated Jan 9, 2018Jan 9, 2018

    • klusta

      Public
      Automatic spike sorting up to 64 channels
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •41•0•0•0•Updated Jul 20, 2017Jul 20, 2017

    • phy

      Public
      Modules for manual spike sorting GUIs, ephys data analysis, visualization
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •186•0•0•0•Updated Jun 30, 2017Jun 30, 2017

    • pyfly2

      Public
      Python wrapper for Point Grey Research's FlyCapture2 C API
      Python
      •10•0•0•0•Updated Feb 5, 2017Feb 5, 2017

    • ZMQInterface

      Public
      C++
      •7•1•2•0•Updated Aug 12, 2016Aug 12, 2016
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