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@NIEHS National Institute of Environmental Health Science

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    127 repositories

    • amadeus

      Public
      R
      •
      Other
      •3•13•30•1•Updated Apr 19, 2026Apr 19, 2026

    • ToxPipe-Model-Comparison

      Public
      This repo is for testing various LLMs for use in ToxPipe
      Jupyter Notebook
      •0•1•0•23•Updated Apr 17, 2026Apr 17, 2026

    • ToxPipe

      Public
      Series of tools used for LLM interaction with toxicological data.
      aillmchatgpt
      aillmchatgpt
      Python
      •
      Other
      •0•2•2•22•Updated Apr 17, 2026Apr 17, 2026

    • ToxPipeMCP

      Public
      ToxPipeMCP is a Model Context Protocol (MCP) server built using the FastMCP framework. This server functions as an API for AI Large-Language Models (LLMs) and p…
      Python
      •
      MIT License
      •0•0•0•22•Updated Apr 17, 2026Apr 17, 2026

    • GeoToxTimeDependent

      Public
      Open-source software for connecting spatiotemporal exposure to individual and population-level risk
      R
      •
      Other
      •3•0•1•0•Updated Apr 16, 2026Apr 16, 2026

    • accelerator-dataverse

      Public
      Dataverse components for Accelerator
      Jinja
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • accelerator-core

      Public
      Core libraries and classes for accelerator metadata backbone
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•8•1•Updated Apr 14, 2026Apr 14, 2026

    • MMC-filetransfer

      Public
      Python package to move, organize and preprocess data from the Macromolecular microscopy consortium
      Python
      •1•2•4•0•Updated Apr 9, 2026Apr 9, 2026

    • accelerator-source-cedar

      Public
      Accelerator CEDAR plugins
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•0•Updated Mar 31, 2026Mar 31, 2026

    • accelerator-helm

      Public
      Helm charts and support for Navigator/Accelerator infrastructure
      Go Template
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•0•Updated Mar 30, 2026Mar 30, 2026

    • GeoTox

      Public
      Open-source software for connecting spatiotemporal exposure to individual and population-level risk
      R
      •
      Other
      •3•7•1•0•Updated Mar 25, 2026Mar 25, 2026

    • accelerator-source-cafe

      Public
      Data source adapter code for CAFE
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Mar 19, 2026Mar 19, 2026

    • irods-go-drs

      Public
      GA4GH DRS implementation for iRODS
      Go
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • ToxPipeRAG

      Public
      A Chroma database for storing text embeddings derived from NTP and ChEMBL chemical reports
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • EHLC

      Public
      Repository to hold materials for the Environmental Health Language Collaborative that benefit from use of GitHub.
      0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • beethoven

      Public
      BEETHOVEN is: Building an Extensible, rEproducible, Test-driven, Harmonized, Open-source, Versioned, ENsemble model for air quality
      R
      •
      Other
      •2•7•9•1•Updated Mar 11, 2026Mar 11, 2026

    • SmartScope

      Public
      SmartScope is a framework for systematic evaluation of cryo-EM specimens
      HTML
      •
      Other
      •10•17•21•1•Updated Feb 24, 2026Feb 24, 2026

    • Spatial-ZEDINet

      Public
      Spatial-ZEDNet
      R
      •0•0•0•0•Updated Feb 20, 2026Feb 20, 2026

    • accelerator-navigator

      Public
      Accelerator support for Navigator
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Feb 19, 2026Feb 19, 2026

    • EMIX

      Public
      Repository of statistical methods for environmental mixtures analyses in epidemiology.
      R
      •1•2•0•1•Updated Feb 4, 2026Feb 4, 2026

    • OPERA_Docker

      Public
      Shell
      •
      MIT License
      •1•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • StochasticCC

      Public
      R
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • MOUSE_TRAP

      Public
      A pipeline for unsupervised quantification of social behavior.
      Python
      •
      MIT License
      •2•3•0•0•Updated Jan 15, 2026Jan 15, 2026

    • EHLC_Data_Harmonization

      Public
      Repository for holding content from the data harmonization use case.
      Python
      •1•0•0•0•Updated Jan 8, 2026Jan 8, 2026

    • PCOR_bookdown_tools

      Public
      TeX
      •4•6•1•1•Updated Dec 5, 2025Dec 5, 2025

    • SET

      Public
      SET group home page for code
      HTML
      •1•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • PrestoGP

      Public
      Penalized Regression on Spatiotemporal Outcomes using Gaussian Processes a.k.a. PrestoGP
      HTML
      •1•1•13•0•Updated Nov 25, 2025Nov 25, 2025

    • pcor_gen3_artifacts

      Public
      Gen3 artifacts (data model, gitops, etc) for PCOR
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•0•7•0•Updated Nov 24, 2025Nov 24, 2025

    • accelerator-source-data-gov

      Public
      Data source adapter code for DATA.GOV
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Nov 20, 2025Nov 20, 2025

    • Test_NSITES

      Public
      JavaScript
      •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025
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