ToxPipeMCP is a Model Context Protocol (MCP) server built using the FastMCP framework. This server functions as an API for AI Large-Language Models (LLMs) and provides these models with additional programmatic tools including:
- Access to the NIEHS's ChemBioTox database, a relational database with toxicological data form over 1 million chemicals, curated from reputable, scientific sources like the CTD, ToxRefDB, InVitroDB, DrugBank, and more
- PubMed literature search
- Search via retrieval augmented generation (RAG) from reports published by the NTP.
This MCP server is Dockerized and the Dockerfile is provided in the repository for quick and easy local setup.
To build, run the following command from the project's root directory:
docker build . -t toxpipe/tpmcp