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    43 repositories

    • Pathology-Foundation-Model-Benchmark

      Public
      Benchmarking the ability of pathology foundation models to do cell type classification
      Python
      •
      MIT License
      •2•10•0•0•Updated Oct 22, 2026Oct 22, 2026

    • ssl-rep-seg

      Public
      Repo for Unsupervised Semantic Segmentation Facilitates Model Understanding
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 19, 2026Oct 19, 2026

    • split_gal4_lines_coverage_analysis

      Public
      scripts to evaluate manually annotated matching hits and extrapolate to complete set of transgenic lines
      Python
      •0•0•0•0•Updated Oct 18, 2026Oct 18, 2026

    • Bio-Image-Datasets

      Public
      Contains dataloaders for popular bio-medical image datasets.
      Python
      •
      MIT License
      •0•1•2•1•Updated Oct 16, 2026Oct 16, 2026

    • aqqua

      Public
      JavaScript
      •0•1•0•0•Updated Oct 6, 2026Oct 6, 2026

    • evaluate-instance-segmentation

      Public
      Evaluation scripts for nuclei instance segmentation in 2d and 3d
      Python
      •
      MIT License
      •2•8•0•0•Updated Sep 23, 2026Sep 23, 2026

    • Vesselpose

      Public
      Vessel Graph Reconstruction from Learned Voxel-wise Direction Vectors in 3D Vascular Images
      Python
      •
      MIT License
      •0•6•1•0•Updated Sep 10, 2026Sep 10, 2026

    • review_vit_xai

      Public
      HTML
      •
      MIT License
      •1•0•0•0•Updated Sep 2, 2026Sep 2, 2026

    • arctique

      Public
      Python
      •
      GNU General Public License v3.0
      •2•11•0•1•Updated Aug 30, 2026Aug 30, 2026

    • aggrigator

      Public
      Jupyter Notebook
      •
      MIT License
      •2•5•1•0•Updated Aug 25, 2026Aug 25, 2026

    • Evaluate-Graph-Metrics

      Public
      Evaluate the similarity between two graphs, e.g. ground truth vs predicted skeletons of blood vessel segmentation.
      Python
      •0•0•0•0•Updated Aug 14, 2026Aug 14, 2026

    • fisbe

      Public
      SCSS
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • nnUNet

      Public
      Python
      •
      Apache License 2.0
      •2.5k•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • aggrigator_experiments

      Public
      HTML
      •1•0•0•1•Updated Jan 22, 2026Jan 22, 2026

    • vr-viewer

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • self_adapt

      Public
      Python
      •0•2•3•0•Updated Oct 20, 2025Oct 20, 2025

    • HIDA_lecture_image_segmentation

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • AqQua-LatLon-to-Region

      Public
      Determines Longhurst Province for a given Lat/Long coordinate
      Python
      •
      MIT License
      •8•0•0•1•Updated Jul 11, 2025Jul 11, 2025

    • brainbow

      Public
      Python
      •0•1•1•0•Updated Jun 26, 2025Jun 26, 2025

    • piezo2_branching_point_analysis

      Public
      Scripts for skeletonization and branching point analysis
      Python
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • CutLER

      Public
      Code release for "Cut and Learn for Unsupervised Object Detection and Instance Segmentation" and "VideoCutLER: Surprisingly Simple Unsupervised Video Instance S…
      Python
      •
      Other
      •108•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • plankton-dinov2

      Public
      PyTorch code and models for the DINOv2 self-supervised learning method.
      Jupyter Notebook
      •
      Apache License 2.0
      •1.3k•1•1•0•Updated Nov 21, 2024Nov 21, 2024

    • TW-autoencoder

      Public
      Python
      •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • PEERCE

      Public
      PEERCE, PD-L1 Expression Estimation for Rare Cancer Entities
      Python
      •
      MIT License
      •0•4•0•0•Updated Jun 3, 2024Jun 3, 2024

    • ACTIS

      Public
      Python
      •
      Other
      •2•0•1•0•Updated Jan 8, 2024Jan 8, 2024

    • mae3d_flylight

      Public
      3d PyTorch implementation of MAE for the Flylight dataset
      Python
      •
      Other
      •1.3k•0•0•0•Updated Dec 18, 2023Dec 18, 2023

    • funlib.learn.torch

      Public
      Python
      •12•0•0•0•Updated Dec 18, 2023Dec 18, 2023

    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      •
      MIT License
      •61•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • ffn

      Public
      Flood-Filling Networks for instance segmentation in 3d volumes.
      Python
      •
      Apache License 2.0
      •111•0•0•0•Updated Oct 29, 2023Oct 29, 2023

    • PatchPerPix

      Public
      official implementation of the PatchPerPix instance segmentation method
      computer-visioninstance-segmentation
      computer-visioninstance-segmentation
      Python
      •
      MIT License
      •7•36•2•0•Updated Jun 27, 2023Jun 27, 2023
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