Repositories list

• sptPALM-Python

  Public
  sptPALM port from Matlab

  Python

  •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

• AnalyseDirectionality

  Public
  Java

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Jan 16, 2026Jan 16, 2026

• OpenMicroscopy

  Public
  Non-comprehensive list of projects and resources related to open microscopy.

  Other

  •30•153•0•0•Updated Oct 14, 2025Oct 14, 2025

• Protein_distribution_analyzer

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

• prj-thunderstorm

  Public
  ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging

  Java

  •

  GNU General Public License v3.0

  •45•1•0•0•Updated Feb 18, 2025Feb 18, 2025

• HohlbeinLab.github.io

  Public
  Github Pages

  HTML

  •7•13•0•0•Updated Apr 29, 2024Apr 29, 2024

• anaDDA

  Public
  anaDDA software for extracting transition rates from D distributions

  MATLAB

  •4•2•1•0•Updated Feb 19, 2023Feb 19, 2023

• Thorlabs_DM_Device_Adapter

  Public
  Device adapter for Thorlabs DMP40 for Micro-Manager

  C++

  •0•0•0•0•Updated Aug 2, 2022Aug 2, 2022

• sSMLMAnalyzer

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 4, 2022Jul 4, 2022

• FTM2

  Public
  A rewritten version of the Fast Temporal Median Filter

  Java

  •

  GNU General Public License v3.0

  •1•8•1•0•Updated Jun 15, 2022Jun 15, 2022

• SMALL-LABS-pSMLM

  Public
  Public repository of SMALL-LABS_Hohlbein

  MATLAB

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Sep 25, 2020Sep 25, 2020

• thunderstorm

  Public
  ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging

  Java

  •

  GNU General Public License v3.0

  •45•0•0•0•Updated Apr 13, 2018Apr 13, 2018

• ebfret-gui

  Public
  ebFRET (GUI version) – Empirical Bayes HMM analysis for multiple single-molecule FRET time series

  MATLAB

  •

  Other

  •9•0•0•0•Updated Feb 20, 2017Feb 20, 2017