Repositories list

• imc

  Public
  A package for the analysis of Imaging Mass Cytometry data

  Python

  •5•13•7•1•Updated Feb 24, 2025Feb 24, 2025

• ggo-imc

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

• utag

  Public
  Python

  •10•34•2•0•Updated Apr 3, 2024Apr 3, 2024

• covid-imc-viz

  Public
  Python

  •0•1•0•2•Updated Mar 26, 2024Mar 26, 2024

• utuc-imc

  Public
  Python

  •0•0•0•0•Updated Nov 30, 2023Nov 30, 2023

• post-covid-imc

  Public
  Python

  •0•1•0•0•Updated Jan 23, 2023Jan 23, 2023

• covid-pdcs

  Public
  Python

  •0•1•0•0•Updated Sep 9, 2022Sep 9, 2022

• msuc-imc

  Public
  Python

  •0•0•0•0•Updated Apr 17, 2022Apr 17, 2022

• covid-placenta

  Public
  Python

  •0•0•0•0•Updated Apr 17, 2022Apr 17, 2022

• Bartelo-Metabolomic-Paper-Repository

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 7, 2022Mar 7, 2022

• covid-metabolomics

  Public archive
  Python

  •0•1•0•0•Updated Sep 9, 2021Sep 9, 2021

• covid-flowcyto

  Public archive
  COVID19 profiling of peripheral immune system with flow cytometry

  Python

  •0•5•0•0•Updated Jul 2, 2021Jul 2, 2021

• Elemento-Diabetes-Classifier

  Public
  Contains files regarding the Spring 2021 research elective course working towards predicting which prediabetic patients develop diabetes and which do not develop diabetes.

  0•0•0•0•Updated Apr 10, 2021Apr 10, 2021

• covid-imc

  Public
  COVID19 profiling of lung tissue with imaging mass cytometry (IMC)

  Python

  •4•11•2•0•Updated Mar 29, 2021Mar 29, 2021

• imctransfer

  Public
  Daemon manager of IMC data transfered over Box.com

  Python

  •0•0•0•0•Updated Dec 7, 2020Dec 7, 2020

• ChIPseeqer

  Public
  A comprehensive framework for the analysis of ChIP-seq data

  chip-seq

  C

  •

  GNU General Public License v3.0

  •0•5•1•0•Updated Nov 25, 2020Nov 25, 2020

• scTCRseq

  Public
  Processing of single cell RNAseq data for the recovery of TCRs in python

  rna-seqsingle-cell-rna-seqpython

  Python

  •

  GNU Affero General Public License v3.0

  •4•27•1•0•Updated Nov 25, 2020Nov 25, 2020

• imcpipeline

  Public
  Imaging mass cytometry pipeline based on ilastik and CellProfiler

  Python

  •1•2•0•0•Updated Oct 7, 2020Oct 7, 2020

• atacflow

  Public
  Analysis pipeline for ATACseq data using Nextflow

  Python

  •5•0•0•0•Updated Jul 14, 2019Jul 14, 2019

• TCRVseq

  Public
  Determine T cell receptor (TCR) variable sequence genes from bulk RNAseq data

  Python

  •

  GNU Affero General Public License v3.0

  •0•3•0•0•Updated Dec 6, 2017Dec 6, 2017