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    • Altar

      Public
      Altar is a set of tools to manage experimental data using Sacred
      Python
      GNU General Public License v3.0
      2540Updated Mar 18, 2026Mar 18, 2026
    • OJIP-fit

      Public
      Analysis of OJIP curves of photosynthetic species to calibrate light intensity
      Python
      GNU General Public License v3.0
      1000Updated Mar 16, 2026Mar 16, 2026
    • Python GUI application for sending experiment results to Sacred/MongoDB databases. Supports metadata, metrics, artifacts, and large file uploads to MinIO or fil…
      Python
      0200Updated Feb 10, 2026Feb 10, 2026
    • Dash web app for browsing Sacred ML experiments stored in MongoDB. Filter runs by config, visualize metrics, and export data as CSV or explore with Pygwalker.
      Python
      0100Updated Feb 10, 2026Feb 10, 2026
    • Docker Compose stack for running Sacred experiment tracking infrastructure locally. Includes MongoDB, MinIO (S3-compatible storage), Omniboard dashboard, and Al…
      Shell
      0100Updated Feb 10, 2026Feb 10, 2026
    • Visualise database content (Sacred + MongoDB)
      Python
      GNU General Public License v3.0
      1101Updated Jan 28, 2026Jan 28, 2026
    • A repository of small tools and deployment configs to manage experiment data end‑to‑end.
      HTML
      GNU General Public License v3.0
      0000Updated Dec 10, 2025Dec 10, 2025
    • A web tool in Python Dash to display data and extract datasets from a Sacred database
      Python
      0000Updated Dec 4, 2025Dec 4, 2025
    • A Python CustomTkinter GUI tool to send experiments to Sacred easily
      Python
      0000Updated Oct 13, 2025Oct 13, 2025
    • Tool for experiment data management deployment
      Shell
      0000Updated Sep 25, 2025Sep 25, 2025
    • Multiuser access to MongoDB, moniboard and data handling with Jupyter
      Batchfile
      GNU General Public License v3.0
      0000Updated Aug 22, 2025Aug 22, 2025
    • A tool to read TIFF files either from minio or local storage
      Python
      0100Updated Aug 8, 2025Aug 8, 2025
    • Control cameras with Python using micromanager protocols
      Python
      GNU General Public License v3.0
      1000Updated Jun 27, 2025Jun 27, 2025
    • This repository explains how to turn a manual microscope stage into a motorized one.
      G-code
      GNU General Public License v3.0
      5000Updated Jun 26, 2025Jun 26, 2025
    • A package allowing to generate train of pulses with an Arduino from Python
      C++
      GNU General Public License v3.0
      1000Updated Jun 26, 2025Jun 26, 2025
    • Jupyter Notebook
      1000Updated Jan 6, 2025Jan 6, 2025
    • Video analysis of light calibration experiment (Dronpa2)
      Jupyter Notebook
      GNU General Public License v3.0
      2100Updated Nov 22, 2023Nov 22, 2023
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