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    17 repositories

    • Altar

      Public
      Altar is a set of tools to manage experimental data using Sacred
      Python
      •
      GNU General Public License v3.0
      •2•5•4•0•Updated Mar 18, 2026Mar 18, 2026

    • OJIP-fit

      Public
      Analysis of OJIP curves of photosynthetic species to calibrate light intensity
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • AltarSender

      Public
      Python GUI application for sending experiment results to Sacred/MongoDB databases. Supports metadata, metrics, artifacts, and large file uploads to MinIO or fil…
      Python
      •0•2•0•0•Updated Feb 10, 2026Feb 10, 2026

    • AltarExtractor

      Public
      Dash web app for browsing Sacred ML experiments stored in MongoDB. Filter runs by config, visualize metrics, and export data as CSV or explore with Pygwalker.
      Python
      •0•1•0•0•Updated Feb 10, 2026Feb 10, 2026

    • AltarDocker

      Public
      Docker Compose stack for running Sacred experiment tracking infrastructure locally. Includes MongoDB, MinIO (S3-compatible storage), Omniboard dashboard, and Al…
      Shell
      •0•1•0•0•Updated Feb 10, 2026Feb 10, 2026

    • AltarViewer

      Public
      Visualise database content (Sacred + MongoDB)
      Python
      •
      GNU General Public License v3.0
      •1•1•0•1•Updated Jan 28, 2026Jan 28, 2026

    • DreamDataManagement

      Public
      A repository of small tools and deployment configs to manage experiment data end‑to‑end.
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 10, 2025Dec 10, 2025

    • SacredDatasetExtractor

      Public
      A web tool in Python Dash to display data and extract datasets from a Sacred database
      Python
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • ExperimentSenderSacred

      Public
      A Python CustomTkinter GUI tool to send experiments to Sacred easily
      Python
      •0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

    • DataManagementToolDocker

      Public
      Tool for experiment data management deployment
      Shell
      •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • workshop_data

      Public
      Multiuser access to MongoDB, moniboard and data handling with Jupyter
      Batchfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • DreamTIFFReader

      Public
      A tool to read TIFF files either from minio or local storage
      Python
      •0•1•0•0•Updated Aug 8, 2025Aug 8, 2025

    • ControlCamera

      Public
      Control cameras with Python using micromanager protocols
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • ControlMotors

      Public
      This repository explains how to turn a manual microscope stage into a motorized one.
      G-code
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • ControlLight

      Public
      A package allowing to generate train of pulses with an Arduino from Python
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • NPQScore-data

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • light_calibration

      Public
      Video analysis of light calibration experiment (Dronpa2)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Nov 22, 2023Nov 22, 2023
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