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    13 repositories

    • DiscvrLabKeyModules

      Public
      A collection of public LabKey modules developed by the Bimber Lab
      HTML
      •4•4•9•1•Updated Jan 15, 2026Jan 15, 2026

    • nimble

      Public
      nimble — execute lightweight, flexible alignments on custom reference libraries
      clibioinformaticspython3rust-langalignmentscrna-seqimmunologyrna-seq-pipeline
      Python
      •
      MIT License
      •0•2•4•1•Updated Jan 15, 2026Jan 15, 2026

    • cellhashR

      Public
      An R package designed to demultiplex cell hashing data
      R
      •8•31•0•0•Updated Jan 11, 2026Jan 11, 2026

    • RIRA

      Public
      The Rhesus Immune Reference Atlas: multi-tissue scRNA-seq atlas and code for cell type/state classification
      R
      •3•10•0•0•Updated Jan 10, 2026Jan 10, 2026

    • DISCVRSeq

      Public
      A collection of command line tools for working with sequencing data
      HTML
      •
      Apache License 2.0
      •16•52•0•0•Updated Dec 19, 2025Dec 19, 2025

    • nimble-aligner

      Public
      nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data
      rustrna-seqbioalignment
      Rust
      •
      MIT License
      •1•2•3•0•Updated Apr 21, 2025Apr 21, 2025

    • nimbleR

      Public
      Contains helper functions to append nimble data to Seurat objects
      R
      •0•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • BimberLab.github.io

      Public
      Bimber Lab Site
      Apache License 2.0
      •1•1•0•0•Updated Feb 11, 2025Feb 11, 2025

    • discvr-components

      Public
      This holds npm packages designed to support DISCVR web applications
      JavaScript
      •
      Apache License 2.0
      •0•0•4•3•Updated Dec 16, 2024Dec 16, 2024

    • testAutomation

      Public
      LabKey Server testing infrastructure and helpers
      Java
      •9•0•0•0•Updated Dec 22, 2022Dec 22, 2022

    • geneSetVis

      Public
      gene-set enrichment visualization.
      R
      •1•1•0•0•Updated Feb 11, 2022Feb 11, 2022

    • discvr-seq

      Public archive
      DISCVR-Seq is a collection of LabKey Server modules to analyze and manage next-generation sequence data
      Dockerfile
      •
      Apache License 2.0
      •2•1•0•0•Updated Jan 19, 2020Jan 19, 2020

    • discvr

      Public archive
      DISCVR is an extension to LabKey Server designed to help labs manage data
      Apache License 2.0
      •1•0•0•0•Updated Jan 19, 2020Jan 19, 2020