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    8 repositories

    • TCGA-NCIT

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • ATGC

      Public
      Python
      •
      MIT License
      •3•5•0•0•Updated Jul 5, 2023Jul 5, 2023

    • DeepTCR

      Public
      Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
      Jupyter Notebook
      •
      MIT License
      •44•0•0•0•Updated Feb 15, 2023Feb 15, 2023

    • SpatialUMAP

      Public
      SpatialUMAP - UMAP applied to spatially derived feature vectors from segmented single cell imaging data.
      spatial-analysissingle-cellumap
      spatial-analysissingle-cellumap
      Python
      •2•2•2•0•Updated May 20, 2021May 20, 2021

    • GENIE

      Public
      GENIE-ArtifactFinder
      Python
      •0•0•0•0•Updated Apr 2, 2021Apr 2, 2021

    • miRge

      Public
      miRge is a logical, ultrafast, small RNA-seq solution to process samples in a highly multiplexed fashion, resulting in dramatically decreased computational requ…
      Prolog
      •7•4•1•0•Updated Dec 29, 2017Dec 29, 2017

    • ExCYT

      Public
      0•0•0•0•Updated Oct 17, 2017Oct 17, 2017

    • vcf2maf

      Public
      Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
      Perl
      •
      Apache License 2.0
      •223•0•0•0•Updated Feb 2, 2017Feb 2, 2017
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