Biomedical Informatics Research and Data Science @ Dartmouth

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12 repositories

GramViT
Public
Python
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GNU General Public License v3.0
•1•0•0•0•Updated Oct 7, 2024Oct 7, 2024
deepslide
Public
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
cancer resnet sliding-windows lung medical-image-analysis pathology-image microscopy wsi histopathology-images
Python
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GNU General Public License v3.0
•140•494•0•0•Updated Jun 7, 2024Jun 7, 2024
SlidePreprocessing
Public
Extract tissues from WSI
Python
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GNU General Public License v3.0
•0•0•1•1•Updated Jan 18, 2024Jan 18, 2024
Slide2Graph
Public
Graph Convolutional Networks for Whole-Slide Analysis in PyTorch
Python
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GNU General Public License v3.0
•1•4•0•0•Updated Jun 10, 2022Jun 10, 2022
cell-heterogeneity-emtscore
Public
Python
•3•0•0•0•Updated Mar 16, 2022Mar 16, 2022
HistoGAN
Public
Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.
data-science machine-learning artificial-intelligence medical-imaging gan cyclegan medical-image-analysis
Python
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GNU General Public License v3.0
•20•73•0•0•Updated Feb 3, 2021Feb 3, 2021
MORE
Public
Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.
semantic-similarity distributional-semantics biomedical-semantic-representation biomedical-ontology tensorflow
Python
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GNU General Public License v3.0
•2•5•0•0•Updated Oct 6, 2020Oct 6, 2020
HealthTranscriptAnnotator
Public
Annotates concepts in patient-physician office visit transcripts.
Java
•0•0•0•0•Updated Jul 17, 2020Jul 17, 2020
DifficultyTranslation
Public
Code for "Difficulty Translation in Histopathology Images" full paper at Artificial Intelligence in Medicine (AIME) 2020.
gan image-classification resnet cyclegan medical-image-analysis resnet-18 histopathology histopathology-images
Python
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GNU General Public License v3.0
•1•1•0•0•Updated Jul 7, 2020Jul 7, 2020
3dMRISegmentation
Public
Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."
mri segmentation medical-image-analysis 3d-resnet ischemic-stroke pytorch
Python
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GNU General Public License v3.0
•10•33•2•0•Updated Jun 9, 2020Jun 9, 2020
medical-image-preprocessing
Public
Functions for pre-processing large images
Python
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GNU General Public License v3.0
•3•10•0•0•Updated Dec 5, 2019Dec 5, 2019
titan-rtx-benchmark
Public
1•5•0•0•Updated Jan 22, 2019Jan 22, 2019