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    19 repositories

    • ParFastAAI

      Public
      Parallel Algorithm for computing Average Amino Acid Identities (AAI) for bacterial and archaeal genomes.
      C
      •
      Apache License 2.0
      •0•0•1•0•Updated May 8, 2026May 8, 2026

    • mcpnet_rs

      Public
      Rust wrapper for MCPNet kernels
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • scSAGA

      Public
      Single Cell Sampled Goromov Wasserstein Alignment
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Mar 3, 2026Mar 3, 2026

    • gbrunner

      Public
      Runner Utilities and Scripts for Gradient Boosting
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • MCPNet

      Public
      C++
      •
      Apache License 2.0
      •0•3•0•0•Updated Jun 16, 2025Jun 16, 2025

    • scrutils

      Public
      Evaluating single-cell RNA-seq pre-processing and Quality Control
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • ParsiMoNe

      Public
      Parallel Construction of Module Networks
      C++
      •1•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • splash

      Public
      Parallel Framework for Construction of MI-based Gene Networks
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • ramBLe

      Public
      A Parallel Framework for Bayesian Learning
      C++
      •
      Apache License 2.0
      •4•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • bn-utils

      Public
      Common Utilities for Learning Bayesian Networks
      C++
      •
      Apache License 2.0
      •2•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • scement

      Public
      Large-scale single-cell integration of RNA-seq datasets
      Python
      •
      Apache License 2.0
      •0•7•0•0•Updated Jun 27, 2024Jun 27, 2024

    • hpc-singlecell-website

      Public
      Scalable memory-efficient and high performance Parallel Implementations for large-scale single cell genomics
      Apache License 2.0
      •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

    • MCPNetPaper2022

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 31, 2023May 31, 2023

    • EnGRaiN

      Public
      ensemble models for combining GRNs from different methods
      Jupyter Notebook
      •
      MIT License
      •3•3•0•0•Updated Jul 8, 2022Jul 8, 2022

    • alfred

      Public
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 11, 2021Aug 11, 2021

    • TINGe

      Public
      TINGe - Tool Inferring Networks of GEnes (using Mutual Information)
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 15, 2021Jul 15, 2021

    • ardmore

      Public
      Python
      •0•0•0•0•Updated Jun 17, 2021Jun 17, 2021

    • tanyard

      Public
      Utilities for Gene network analysis
      Python
      •0•0•0•0•Updated Jun 17, 2021Jun 17, 2021

    • parabayl

      Public
      Parallel Exact Learning of Bayesian Networks
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 28, 2020Apr 28, 2020
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