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    22 repositories

    • snputils

      Public
      A Python library for processing diverse genomes with ease
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•18•0•0•Updated Jan 4, 2025Jan 4, 2025

    • HyperFast

      Public
      Python
      •
      Other
      •12•66•1•0•Updated Dec 10, 2024Dec 10, 2024

    • asPopGenStats

      Public
      Ancestry-specific tool for calculating population genetics statistics from Gnomix output
      Python
      •0•4•0•0•Updated Jul 8, 2024Jul 8, 2024

    • gnomix

      Public
      A fast, scalable, and accurate local ancestry method.
      genomicsancestrymachine-learning
      Python
      •
      Other
      •15•89•21•2•Updated Jul 3, 2024Jul 3, 2024

    • neural-admixture

      Public
      Rapid population clustering with autoencoders
      genomicspopulation-geneticsadmixtureancestry-inferencemachine-learning
      Python
      •9•67•6•1•Updated Jun 25, 2024Jun 25, 2024

    • DataFix

      Public
      Jupyter Notebook
      •
      Other
      •3•9•0•0•Updated Feb 1, 2024Feb 1, 2024

    • PopGenAdapt

      Public
      Semi-Supervised Domain Adaptation for Genotype-to-Phenotype Prediction in Underrepresented Populations
      Python
      •0•4•0•0•Updated Jan 11, 2024Jan 11, 2024

    • MergeGenome

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 2, 2024Jan 2, 2024

    • archetypal-analysis

      Public
      Python
      •1•13•1•1•Updated Dec 7, 2023Dec 7, 2023

    • aegen

      Public
      Autoencoders for genomic data compression, classification, imputation, phasing and simulation.
      compressionsimulationclassificationimputationphasing
      Python
      •
      Other
      •2•2•0•0•Updated Oct 2, 2023Oct 2, 2023

    • completion

      Public
      Python
      •1•10•0•2•Updated Sep 27, 2023Sep 27, 2023

    • SALAI-Net

      Public
      Python
      •
      Other
      •2•14•1•0•Updated Feb 6, 2023Feb 6, 2023

    • XGMix

      Public
      Jupyter Notebook
      •2•14•0•5•Updated Nov 22, 2022Nov 22, 2022

    • adversarial-attack-genotype

      Public
      Official code for "Adversarial Attacks on Genotype Sequences" paper
      Jupyter Notebook
      •0•2•0•0•Updated Nov 9, 2022Nov 9, 2022

    • intro_to_machine_learning

      Public
      SCSS
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 10, 2022Aug 10, 2022

    • mdPCA

      Public
      missing DNA PCA algorithm for ancestry masked or ancient genomic data.
      Python
      •0•1•0•0•Updated Jun 18, 2022Jun 18, 2022

    • GMMN-genotype-simulation

      Public
      This repository includes a python implementation of a GMMN to generate genotypes of a particular ancestry
      Python
      •0•1•0•0•Updated May 5, 2022May 5, 2022

    • genTools

      Public
      genomic tools
      Python
      •0•1•0•0•Updated Apr 11, 2022Apr 11, 2022

    • LAI-Net

      Public
      Official implementation of LAI-Net
      Python
      •2•5•2•0•Updated Apr 11, 2022Apr 11, 2022

    • hyperPop

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 22, 2022Feb 22, 2022

    • genTopo

      Public
      genetic topology, TDA on DNA
      Jupyter Notebook
      •0•1•0•0•Updated Feb 24, 2021Feb 24, 2021

    • XGMix-models

      Public
      0•2•0•0•Updated Jul 22, 2020Jul 22, 2020