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Update spatial decomposition results #339

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186 changes: 101 additions & 85 deletions results/spatial_decomposition/data/dataset_info.json

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370 changes: 144 additions & 226 deletions results/spatial_decomposition/data/method_info.json

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1,542 changes: 1,542 additions & 0 deletions results/spatial_decomposition/data/metric_execution_info.json

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27 changes: 15 additions & 12 deletions results/spatial_decomposition/data/metric_info.json
Original file line number Diff line number Diff line change
@@ -1,13 +1,16 @@
[
{
"metric_name": "r2",
"metric_summary": "R2, or the \u201ccoefficient of determination\u201d, reports the fraction of the true proportion values\u2019 variance that can be explained by the predicted proportion values. The best score, and upper bound, is 1.0. There is no fixed lower bound for the metric. The uniform/non-weighted average across all cell types/states is used to summarise performance.",
"paper_reference": "miles2005rsquared",
"maximize": true,
"image": "openproblems",
"task_id": "spatial_decomposition",
"commit_sha": "b3456fd73c04c28516f6df34c57e6e3e8b0dab32",
"metric_id": "r2",
"implementation_url": "https://github.com/openproblems-bio/openproblems/blob/main/openproblems/tasks/spatial_decomposition/metrics/r2.py"
}
]
{
"task_id": "metrics",
"metric_id": "r2",
"metric_name": "R2",
"metric_summary": "R2 represents the proportion of variance in the true proportions which is explained by the predicted proportions.",
"metric_description": "R2, or the “coefficient of determination”, reports the fraction of the true proportion values' variance that can be explained by the predicted proportion values. The best score, and upper bound, is 1.0. There is no fixed lower bound for the metric. The uniform/non-weighted average across all cell types/states is used to summarise performance. By default, cases resulting in a score of NaN (perfect predictions) or -Inf (imperfect predictions) are replaced with 1.0 (perfect predictions) or 0.0 (imperfect predictions) respectively.\n",
"paper_reference": {
"doi": "10.1002/0470013192.bsa526"
},
"implementation_url": "https://github.com/openproblems-bio/task_spatial_decomposition/blob/9f32dec1f8fe366abd433021fe0d2e0cab492aac/src/metrics/r2/config.vsh.yaml",
"code_version": null,
"commit_sha": "9f32dec1f8fe366abd433021fe0d2e0cab492aac",
"maximize": true
}
]
566 changes: 233 additions & 333 deletions results/spatial_decomposition/data/quality_control.json

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