Add provenance and index database management

.gitignore

@@ -1,6 +1,46 @@
-# Python files
+# {# pkglts, github
+# Byte-compiled / optimized / DLL files
+__pycache__/
 *.py[cod]
 
+# pkglts files
+.pkglts/info.log*
+
+# Packages
+*.egg
+*.egg-info
+.eggs
+.Python
+*.pth
+dist/
+build/
+env/
+downloads/
+eggs/
+parts/
+bin/
+var/
+sdist/
+develop-eggs/
+.installed.cfg
+lib/
+lib64/
+
+# editors
+.idea/
+.vscode/
+
+# Vim files
+*.swp
+*.*~
+
+# Mr Developer
+.mr.developer.cfg
+.project
+.pydevproject
+.settings
+
+
 # C extensions
 *.so
 *.dll
@@ -14,54 +54,45 @@
 # Compiled Object files
 *.os
 
-# Packages
-*.egg
-*.egg-info
-dist
-build
-build-scons
-eggs
-parts
-bin
-var
-sdist
-develop-eggs
-.installed.cfg
-lib
-lib64
-__pycache__
-*.pth
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
 
 # Installer logs
 pip-log.txt
+pip-delete-this-directory.txt
 .amlog
 .sconsign.dblite
 
-# Unit test / coverage reports
-.coverage
-.tox
-nosetests.xml
-
-# Designer files
-*visualea/src/visualea/ui_*
-
 # Translations
 *.mo
+*.pot
 
-# Vim files
-*.swp
-*.*~
+# Django stuff:
+*.log
 
-# Mr Developer
-.mr.developer.cfg
-.project
-.pydevproject
-.settings
-.idea
+# PyBuilder
+target/
+
+# jupyter notebooks
+.ipynb_checkpoints/
 
 # svn
 .svn
 
-# temporary files
-*._icon.png
 
+# coverage
+.coverage
+
+# sphinx autogen file
+doc/_dvlpt/
+
+
+# #}
+
+# user custom filters
+# ignore cassandra files
+.cassandraWorkbench*
+.vscode/

.pkglts/pkg_cfg.json

@@ -1,81 +1,65 @@
 {
   "_pkglts": {
-    "auto_install": true,
-    "install_front_end": "stdout",
-    "use_prompts": false,
-    "version": 11
-  },
+    "auto_install": true, 
+    "install_front_end": "stdout", 
+    "use_prompts": false, 
+    "version": 3
+  }, 
   "base": {
     "authors": [
       [
-        "Christophe Pradal",
+        "Christophe Pradal", 
         "christophe dot pradal at cirad dot fr"
-      ],
+      ], 
       [
-        "Samuel Dufour-Kowalski",
+        "Samuel Dufour-Kowalski", 
         "dufourko at cirad dot fr"
-      ],
+      ], 
       [
-        "revesansparole",
+        "revesansparole", 
         "[email protected]"
-      ],
-      [
-        "Guillaume Baty",
-        ""
       ]
-    ],
-    "namespace": "openalea",
-    "namespace_method": "pkg_util",
-    "pkgname": "core",
-    "url": "https://github.com/openalea/core"
-  },
-  "coverage": {},
+    ], 
+    "namespace": "openalea", 
+    "pkgname": "core", 
+    "url": null
+  }, 
+  "coverage": {}, 
   "doc": {
-    "description": "OpenAlea.Core is able to discover and manage packages and logical components, build and evaluate dataflows and Generate final applications",
-    "fmt": "rst",
+    "description": "OpenAlea.Core is able to discover and manage packages and logical components, build and evaluate dataflows and Generate final applications", 
     "keywords": [
       "openalea"
-    ],
-    "contributors": "OpenAlea",
-    "authors": "Christophe Pradal"
-  },
-  "git": {},
+    ]
+  }, 
   "github": {
-    "owner": "{{ base.authors[0][0] }}",
-    "project": "{{ base.pkgname }}",
+    "owner": "openalea", 
+    "project": "{{ base.pkgname }}", 
     "url": "https://github.com/{{ github.owner }}/{{ github.project }}"
-  },
+  }, 
   "license": {
-    "name": "cecill-c",
-    "organization": "CIRAD/INRIA",
-    "project": "{{ base.pkgname }}",
+    "name": "cecill-c", 
+    "organization": "CIRAD/INRIA", 
+    "project": "{{ base.pkgname }}", 
     "year": 2015
-  },
+  }, 
   "pysetup": {
     "intended_versions": [
       "27"
-    ],
-    "require": [
-      {
-        "name": "openalea/deploy",
-        "pkg_mng": "git"
-      }
-    ]
-  },
+    ], 
+    "require": [["git", "openalea/deploy"], ["git", "openalea/provenance"]]
+  }, 
   "readthedocs": {
     "project": "openalea-core"
-  },
+  }, 
   "sphinx": {
-    "autodoc_dvlpt": true,
-    "build_dir": "build/sphinx",
+    "autodoc_dvlpt": true, 
     "theme": "default"
-  },
-  "test": {
-    "suite_name": "pytest"
-  },
+  }, 
+  "test": {}, 
+  "travis": {}, 
   "version": {
-    "major": 2,
-    "minor": 0,
-    "post": 2
+    "major": 1, 
+    "minor": 4, 
+    "post": 0
   }
 }

.pkglts/pkg_hash.json

@@ -1,66 +1,66 @@
 {
   ".coveragerc": {
     "coverage": "fJOlJPmBiCjF4ydI8eATEwZLJXAhQR/S/fMnVio8FMbz4iTTM+1JD+8J0wJ+Je7t0Fi7sY+cxlRjpumCigbtVg=="
-  },
+  }, 
   ".gitignore": {
-    "git": "BajiufpLax6rf5dmemG7nvqJTLIyPShHtj2YTKyJ7vgPbEZrmsUMebpVX4WoruGBcRQwPOqS5fn5D/PjPmQErw=="
-  },
+    "github": "wVVlsQPP65I5Gg6bW37JENFtYxO6Naq7x+mO0DaDGFVbMPk2o5QJ3DUwMoYfkOfou9lcR/6DC0MXr7hnrTWc9g=="
+  }, 
   ".travis.yml": {
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-  },
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+    "travis.addons": "z4PhNX7vuL3xVChQ1m2AB9Yg5AULVxXcg/SpIdNs6c5H0NE8XYXysP+DGNKHfuwvY7kxvUdBeoGlODJ6+SfaPg==", 
+    "travis.after": "z4PhNX7vuL3xVChQ1m2AB9Yg5AULVxXcg/SpIdNs6c5H0NE8XYXysP+DGNKHfuwvY7kxvUdBeoGlODJ6+SfaPg==", 
+    "travis.install": "Ay/BrD6JoeZi+JszHb0sHpFfzVEp9qaeFsWBBBJG0t2xwgF3tinQxifkNFwuJdlyCjy6U9k901dZnqt6yrzzxQ==", 
+    "travis.script": "STjpu3u3YoOeTz4mBIflZ58OodPdFRPFtLt6c8CUciNwe/fYhCTxlKTMB/S7VL1ippUsQVIfrFGl+OQ/ALWmPQ=="
+  }, 
   "AUTHORS.rst": {
-    "doc": "mr4dDvb808KCdcLSRWe9brxcIBamJp3DMpFzoEhHCeSLmr7Q0QfrNRZ79dnneEyWHgcs2srtibLIZlGOq1S0rQ=="
-  },
-  "CONTRIBUTING.rst": {},
-  "HISTORY.rst": {},
+    "doc": "HvXVe1vS1t/xzXuerP756vvyf3I4V8xEOqvNIEGejKpuzVRZr6wR4C24rm8O9OnBsYedYHvDxQRF25urtQCDMQ=="
+  }, 
+  "CONTRIBUTING.rst": {}, 
+  "HISTORY.rst": {}, 
   "LICENSE": {
     "license": "21ExMhSzB2uXQuU1VoH7++nrb4u6TbesqGtJDpM39OLPWft9SJ2tJ956R6foYmkI9VuJay7SUrhFLPxxMEHLxg=="
-  },
+  }, 
   "MANIFEST.in": {
     "pysetup": "vzgcfdwg7fafu0G3HEmFsZnC8jB8sa4zeSFQ2ReZO+pUfGeynOcw4+CIzP/ZV7n5nmpGGI7xqcdcPtOFfoivdQ=="
-  },
+  }, 
   "README.rst": {
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-  },
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+  }, 
   "doc/Makefile": {
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-  "doc/_static/nonempty.txt": {},
-  "doc/authors.rst": {},
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+  "doc/_static/nonempty.txt": {}, 
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   "doc/conf.py": {
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-  "doc/history.rst": {},
-  "doc/index.rst": {},
-  "doc/installation.rst": {},
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-  "doc/usage.rst": {},
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+  }, 
   "test/__init__.py": {}
 }