feat(pmc): add PubMed Central integration for biomedical full-text papers#34
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hongkongkiwi wants to merge 5 commits intoopenags:mainfrom
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feat(pmc): add PubMed Central integration for biomedical full-text papers#34hongkongkiwi wants to merge 5 commits intoopenags:mainfrom
hongkongkiwi wants to merge 5 commits intoopenags:mainfrom
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…ic paper search OpenAlex is a free and open catalog of the global research system with over 200M works. This integration provides: - Full paper search with advanced filters (year, type, full-text availability) - Citation and reference traversal (forward and backward citations) - Author-based search - Related papers discovery based on concepts and references - DOI and OpenAlex ID lookup - Comprehensive metadata including concepts, keywords, and open access info Features: - search_openalex: Main search function with filtering options - get_openalex_paper: Get paper by OpenAlex ID - get_openalex_paper_by_doi: Get paper by DOI - get_openalex_citations: Get papers that cite this work - get_openalex_references: Get papers referenced by this work - search_openalex_by_author: Search papers by author name - get_openalex_related: Find related papers - download_openalex: Download PDF from open access sources - read_openalex_paper: Extract text from PDF
…holar This enhancement adds comprehensive citation and reference functionality: Semantic Scholar enhancements: - get_semantic_citations: Get papers that cite this work (forward citations) - get_semantic_references: Get papers referenced by this work (backward citations) - get_semantic_related: Get related papers based on concepts and citations - search_semantic_by_author: Search papers by author name Note: OpenAlex already has full citation/reference support from the previous feature. These tools enable: - Citation graph traversal (forward and backward) - Related paper discovery - Author-based paper search - Comprehensive citation analysis
Sci-Hub provides access to millions of research papers behind paywalls. This integration exposes the existing Sci-Hub fetcher as an MCP tool. Features: - download_scihub: Download PDFs using DOI, PMID, or URL Note: - Sci-Hub operates in a legal gray area - Only use for legitimate research purposes - Ensure compliance with local laws and institution policies
Same papers often appear in multiple sources (arXiv, Semantic Scholar, etc.). This feature adds intelligent deduplication based on: - DOI matching (most reliable) - Title similarity (>= 90% match) - Author + year matching Features: - deduplicate_papers: Remove duplicates from paper list - merge_papers: Merge duplicates by combining metadata - find_duplicate_groups: Analyze duplicates without removing Use cases: - Combine results from multiple search sources - Remove duplicate papers from aggregated results - Merge complementary metadata from different sources
…pers PMC provides free access to full-text biomedical and life sciences literature. This integration enables searching and downloading complete articles. Features: - search_pmc: Search PMC using E-utilities API - get_pmc_paper: Get paper by PMCID - download_pmc: Download PDF of PMC articles - read_pmc_paper: Extract text from PMC PDFs PMC differs from PubMed (abstracts only) - PMC has complete full-text articles from biomedical and life sciences journals at NIH/NLM.
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Add PubMed Central (PMC) integration for biomedical full-text papers. PMC provides free access to complete articles (unlike PubMed which has abstracts only). Adds search_pmc, get_pmc_paper, download_pmc, read_pmc_paper tools.