Fix --extra-col-pair example in the docs #272
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agalitsyna
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Jun 27, 2025
pairtools/cli/dedup.py
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| @@ -160,7 +160,8 @@ | |||
| "duplicates. Can be either provided as 0-based column indices or as column " | |||
| 'names (requires the "#columns" header field). The option can be provided ' | |||
| "multiple times if multiple column pairs must match. " | |||
| 'Example: --extra-col-pair "phase1" "phase2". [output format option]', | |||
| 'Example, to dedup phased pairs:' | |||
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Suggested change:
Example for dedup of phased pairs, remove duplicates matching in columns phase1 and (independently) in column phase2. Note how each --extra-col-pair expects a pair of columns as input:
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