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Releases: niaid/imaris_extensions

v0.1.0

21 Apr 21:59
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v0.1.0
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Installing

  1. Download the source code zip file and unzip it.
  2. Follow the setup instructions.

Release Notes

Detailed documentation is available on the package website.

Added

  • XTRegisterSameChannel: Registration of 2D or 3D images that share a common channel (correlation based affine alignment). Sample datasets are freely available on zenodo DOI. A video illustrating the usage of the extension is available on YouTube.
  • XTChannelArithmetic: Perform channel arithmetic, and more advanced channel manipulations via short SimpleITK expressions (short SimpleITK programs).
  • XTVirtualHEStain: Create a virtual H&E stain from a fluoresence image and add the RGB image as three new channels to the original image.
  • XTConfigureChannelSettings: Configure channel settings, name, description and visualization configuration specified via a csv file or an Imaris file.
  • XTExportChannelSettings: Export channel settings, name, description and visualization configuration to a csv file. The resulting csv file can be easily edited and then applied to other imaris files using the XTConfigureChannelSettings extension.
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