Merge pull request #3458 from nf-core/nh13-patch-1

fix: linting with comments after the input directive
nf-core · Feb 20, 2025 · 1e63caf · 1e63caf
2 parents 22eb20c + b253681
commit 1e63caf
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,6 +10,7 @@
 ### Linting
 
 - Add linting for ifEmpty(null) ([#3411](https://github.com/nf-core/tools/pull/3411))
+- fix: linting with comments after the input directive ([#3458](https://github.com/nf-core/tools/pull/3458))
 
 ### Modules
 

diff --git a/nf_core/components/nfcore_component.py b/nf_core/components/nfcore_component.py
@@ -206,6 +206,7 @@ def get_inputs_from_main_nf(self) -> None:
             input_data = data.split("input:")[1].split("output:")[0]
             for line in input_data.split("\n"):
                 channel_elements: Any = []
+                line = line.split("//")[0]  # remove any trailing comments
                 regex = r"(val|path)\s*(\(([^)]+)\)|\s*([^)\s,]+))"
                 matches = re.finditer(regex, line)
                 for _, match in enumerate(matches, start=1):