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@neuropoly

NeuroPoly

Ecole Polytechnique, Université de Montréal

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  1. gmseg gmseg Public

    Spinal cord gray matter segmentation using deep dilated convolutions.

    Jupyter Notebook 45 8

  2. domainadaptation domainadaptation Public

    Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

    Python 43 9

  3. deep-active-learning deep-active-learning Public

    Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)

    Jupyter Notebook 38 13

  4. totalspineseg totalspineseg Public

    Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

    Python 20 1

  5. axonseg axonseg Public

    Segment axon and myelin from microscopy data. Written in Matlab.

    MATLAB 19 12

  6. multiclass-segmentation multiclass-segmentation Public archive

    Repository for the code related to the NIH marmoset longitudinal segmentation project.

    Python 17 8

Repositories

Showing 10 of 59 repositories
  • intranet.neuro.polymtl.ca Public

    NeuroPoly's lab manual

    neuropoly/intranet.neuro.polymtl.ca’s past year of commit activity
    HTML 4 7 46 11 Updated Dec 4, 2024
  • neuro.polymtl.ca Public

    NeuroPoly's Website

    neuropoly/neuro.polymtl.ca’s past year of commit activity
    Python 3 7 27 3 Updated Dec 3, 2024
  • neuropoly/slicer-manual-annotation’s past year of commit activity
    Python 4 MIT 1 37 (7 issues need help) 2 Updated Nov 30, 2024
  • totalspineseg Public

    Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

    neuropoly/totalspineseg’s past year of commit activity
    Python 20 LGPL-3.0 1 11 2 Updated Nov 29, 2024
  • coil-qa Public

    Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.

    neuropoly/coil-qa’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Nov 28, 2024
  • cortical-surface64mT Public

    Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

    neuropoly/cortical-surface64mT’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Nov 20, 2024
  • segmentation-tools-awesome-list Public

    This awesome list refers to different 3D Slicer modules and other open source platforms/softwares/solutions availables for manual segmentation and classification workflows.

    neuropoly/segmentation-tools-awesome-list’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 15, 2024
  • Susceptibility-Separation-Phantom Public

    This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

    neuropoly/Susceptibility-Separation-Phantom’s past year of commit activity
    MATLAB 5 MIT 1 3 0 Updated Nov 12, 2024
  • bibeasy Public

    Set of tools to manage academic bibliography

    neuropoly/bibeasy’s past year of commit activity
    Python 2 Apache-2.0 0 13 0 Updated Oct 29, 2024
  • template Public

    A framework for creating unbiased MRI templates of the spinal cord

    neuropoly/template’s past year of commit activity
    Python 5 MIT 4 17 0 Updated Oct 22, 2024

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