adding VOGDB to database list

docs/Storage/Databases.md

@@ -9,17 +9,17 @@
 Many research projects use reference or external databases.
 This page describes databases that exist on Mahuika for use as well as recommendations for using some specific external databases.
 
 ## Maintained databases on Mahuika
 
 Some databases are readable for all users on Mahuika.
 These databases can be found at `/opt/nesi/db`.
 Some environmental modules depend on these databases and connect to these directories automatically.
 
 Dataset | Path | Licence Status | Notes
 -- | -- | -- | --
 [AlphaFold](https://alphafold.ebi.ac.uk/) | /opt/nesi/db/alphafold_db | CC-BY-4.0 | Predicted protein structures generated by AlphaFold
 [BLAST](https://blast.ncbi.nlm.nih.gov/) | /opt/nesi/db/blast | Public | NCBI BLAST nucleotide and protein databases
 [cartopy](https://github.com/SciTools/cartopy) | /opt/nesi/db/cartopy | BSD-3-Clause | Databases for cartopy module
 [centrifuge](https://ccb.jhu.edu/software/centrifuge/) | /opt/nesi/db/centrifuge | GPL-3.0 | Databases for centrifuge module
 [CheckM2](https://github.com/chklovski/CheckM2) | /opt/nesi/db/CheckM2_DB | GPL-3.0 | Database for CheckM2 module
 [CheckM](https://github.com/Ecogenomics/CheckM) | /opt/nesi/db/CheckM_DB | GPL-3.0 | Database for CheckM module
@@ -34,6 +34,7 @@
 [gtdbtk_214](https://gtdb.ecogenomic.org/) | /opt/nesi/db/gtdbtk_214 | CC-BY-SA 4.0 | Genome Taxonomy Database release 214 used by GTDB-Tk module
 [gtdbtk_220](https://gtdb.ecogenomic.org/) | /opt/nesi/db/gtdbtk_220 | CC-BY-SA 4.0 | Genome Taxonomy Database release 220 used by GTDB-Tk module
 [HUMAnN](https://huttenhower.sph.harvard.edu/humann/) | /opt/nesi/db/Humann | MIT | Databases for HUMAnN module
+[JGI IMG](https://img.jgi.doe.gov/) | /opt/nesi/db/JGI-IMG | Public | JGI IMG/M databases
 [Kaiju](https://github.com/bioinformatics-centre/kaiju) | /opt/nesi/db/Kaiju | GPL-3.0 | Database index for Kaiju module
 [Kraken2](https://github.com/DerrickWood/kraken2) | /opt/nesi/db/Kraken2 | MIT | Databases for Kraken2 module
 [megaX](https://www.megasoftware.net/) | /opt/nesi/db/megaX | Free for academics | Evolutionary analysis reference data for MegaX module
@@ -51,6 +52,7 @@
 [VEP](https://www.ensembl.org/info/docs/tools/vep/) | /opt/nesi/db/VariantEffectPredictor | No restrictions | Ensembl annotation data for variant effect prediction
 [VIBRANT](https://github.com/AnantharamanLab/VIBRANT) | /opt/nesi/db/VIBRANT_v1.2.1_databases | GPL-3.0 | Viral genome and HMM databases used by VIBRANT environmental module
 [VirSorter](https://github.com/simroux/VirSorter) | /opt/nesi/db/VirSorter | GPL-2.0 | Viral hallmark gene and profile databases
+[VOGDB](https://vogdb.org/) | /opt/nesi/db/VOGDB | Public | The Virus Orthologous Groups Database (VOGDB) is a multi-layer database that progressively groups viral genes into groups connected by increasingly remote homology.
 [waafle](https://github.com/biobakery/waafle) | /opt/nesi/db/waafle | MIT | Reference sets for gene neighborhood analysis for waafle environmental module
 [checkv](https://bitbucket.org/berkeleylab/checkv) | /opt/nesi/db/checkv-db-v0.6 | [BSD 3-Clause-style](https://bitbucket.org/berkeleylab/checkv/src/master/LICENSE.txt) | Viral genome completeness and contamination database for CheckV environmental module
 
@@ -63,13 +65,13 @@
 !!! note "Requesting new or updated databases"
     If there is a database you think may be useful to many Mahuika users, or if you would like an updated version of one of the maintained databases, please {% include "partials/support_request.html" %} with details about the source and version of the database of interest.
 
 ## Recommendations for obtaining data from selected external databases
 
 ### JGI Portals
 
 The [Joint Genome Institute](https://jgi.doe.gov/) has many databases and data portals available.
 To download/access files from JGI you will need to register for an account.
 We recommend you utilize the [Globus endpoint provided by JGI](https://genome.jgi.doe.gov/portal/help/download.jsf#/globus) to directly transfer files from the JGI servers to Mahuika.
 For more information about using Globus on Mahuika see [the Globus docs section](../Data_Transfer/Globus/Globus_Overview.md).
 
 ### NCBI