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feat: gp noise in discovery#144

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jeremy-baier wants to merge 102 commits into
nanograv:mainfrom
jeremy-baier:feat/jgb-discovery
Open

feat: gp noise in discovery#144
jeremy-baier wants to merge 102 commits into
nanograv:mainfrom
jeremy-baier:feat/jgb-discovery

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@jeremy-baier

@jeremy-baier jeremy-baier commented Jan 26, 2026

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Model Building

  • build discovery likelihood with different settings
  • includes the time domain SWGP using a custom segmentation ( from mercedes )
  • this requires an addition to discovery, coordinating with pat
  • set up dmgp, chromatic gp, ( dmx too )

Sampler set up

  • set up a basic numpyro nuts sampler with tunable nuts settings
  • pull in Dave + Pat’s code for optimization
  • we probably need check pointing for the NUTS, which i can steal from the old outliers PR.

Add noise to model

  • turn output of the NUTS into laforge core and/or even just a par.txt, chain.txt
  • add noise to pint models

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Interfacing model building with notebooks

noise_run:
  model:
      include_rn:
          basis: interpolation/fourier
          Nfreqs: 100
          dt: 3
          psd: powerlaw
          kernel: sq_exp
      include_rn:
          basis: interpolation/fourier
          Nfreqs: 100
          dt: 3
          psd: powerlaw
          kernel: sq_exp
      inc_chromgp: false
  inference:
     likelihood: discovery
     sampler: NUTS
     n_iter: 2000
     n_warmup: 500
     n_checkpoint: 10

…g to include fiducial timing model parameter values and perturbations in linearized timing model
…'s tanh transform; add lnlike, lnpost to NUTS feather file
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