Update pre-commit packages

[michplunkett]

Describe your changes

Update pre-commit packages and general 🐍 packages. Remove isort package from pre-commit.

Checklist before requesting a review

• The code runs successfully.

(python-project-template) michaelp@MacBook-Air-18 python-project-template % make lint
uv pip compile --generate-hashes pyproject.toml > requirements.txt
Resolved 20 packages in 5ms
pre-commit run --all-files
nbqa-ruff................................................................Passed
nbqa-black...............................................................Passed
nbqa-isort...............................................................Passed
trim trailing whitespace.................................................Passed
check docstring is first.................................................Passed
check that executables have shebangs.................(no files to check)Skipped
check json...........................................(no files to check)Skipped
check for case conflicts.................................................Passed
check toml...............................................................Passed
check for merge conflicts................................................Passed
check xml............................................(no files to check)Skipped
check yaml...............................................................Passed
fix end of files.........................................................Passed
check for broken symlinks............................(no files to check)Skipped
mixed line ending........................................................Passed
sort simple yaml files...............................(no files to check)Skipped
pretty format json...................................(no files to check)Skipped
check blanket noqa.......................................................Passed
check for not-real mock methods..........................................Passed
check for eval().........................................................Passed
use logger.warning(......................................................Passed
ruff check...............................................................Passed
ruff format..............................................................Passed
(python-project-template) michaelp@MacBook-Air-18 python-project-template %