deps: update ndarray requirement from >=0.15,<=0.16 to >=0.15, <=0.16 #77
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: '0 18 * * *' | |
| concurrency: | |
| group: ${{ github.workflow }}-@{{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| CARGO_TERM_COLOR: always | |
| jobs: | |
| lint: | |
| name: lint | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {command: fmt, rust: nightly} | |
| - {command: clippy, rust: stable} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: '${{matrix.rust}}', components: 'rustfmt, clippy'} | |
| - name: Install HDF5 | |
| run: sudo apt-get update && sudo apt-get install libhdf5-dev | |
| - name: Run cargo ${{matrix.command}} | |
| run: cargo ${{matrix.command}} ${{matrix.command == 'fmt' && '--all -- --check' || '--workspace --exclude hdf5-metno-src -- -D warnings -D clippy::cargo -A clippy::multiple-crate-versions'}} | |
| doc: # This task should mirror the procedure on docs.rs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: {submodules: true} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: nightly} | |
| - name: Document workspace | |
| env: | |
| RUSTDOCFLAGS: "--cfg docsrs" | |
| run: cargo doc --features static,zlib,blosc,lzf,f16,complex | |
| brew: | |
| name: brew | |
| runs-on: macos-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {version: [email protected]} | |
| - {version: [email protected]} | |
| - {version: hdf5-mpi, mpi: true} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: {submodules: true} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: stable} | |
| - name: Install HDF5 (${{matrix.version}}) | |
| run: brew install ${{matrix.version}} | |
| - name: Build and test all crates | |
| run: | | |
| [ "${{matrix.mpi}}" != "" ] && FEATURES=mpio | |
| cargo test -vv --features="$FEATURES" | |
| conda: | |
| name: conda | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {os: ubuntu-latest, version: 1.8.16, channel: conda-forge, rust: stable} | |
| - {os: windows-latest, version: 1.8.17, channel: conda-forge, rust: stable} | |
| - {os: macos-13, version: 1.8.18, channel: anaconda, rust: stable} | |
| - {os: ubuntu-latest, version: 1.8.20, channel: anaconda, rust: beta} | |
| - {os: ubuntu-latest, version: 1.10.1, channel: anaconda, rust: nightly} | |
| - {os: windows-latest, version: 1.10.2, channel: anaconda, rust: beta} | |
| - {os: ubuntu-latest, version: 1.10.3, channel: conda-forge, rust: nightly} | |
| - {os: windows-latest, version: 1.10.4, channel: anaconda, rust: nightly} | |
| - {os: ubuntu-latest, version: 1.10.4, mpi: openmpi, channel: conda-forge, rust: stable} | |
| - {os: ubuntu-latest, version: 1.10.5, channel: conda-forge, rust: beta} | |
| - {os: macos-13, version: 1.10.5, mpi: openmpi, channel: conda-forge, rust: beta} | |
| - {os: ubuntu-latest, version: 1.10.6, channel: anaconda, rust: stable} | |
| - {os: ubuntu-latest, version: 1.10.6, mpi: mpich, channel: conda-forge, rust: nightly} | |
| # - {os: ubuntu, version: 1.10.8, channel: conda-forge, rust: stable} | |
| - {os: ubuntu-latest, version: 1.12.0, mpi: openmpi, channel: conda-forge, rust: stable} | |
| - {os: macos-latest, version: 1.12.0, channel: conda-forge, rust: stable} | |
| - {os: windows-latest, version: 1.12.0, channel: conda-forge, rust: stable} | |
| - {os: ubuntu-latest, version: 1.12.1, channel: conda-forge, rust: stable} | |
| - {os: macos-latest, version: 1.14.0, channel: conda-forge, rust: stable} | |
| - {os: windows-latest, version: 1.14.0, channel: conda-forge, rust: stable} | |
| - {os: ubuntu-latest, version: 1.14.0, channel: conda-forge, rust: stable} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: {submodules: true} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: '${{matrix.rust}}'} | |
| - name: Install conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: {auto-update-conda: false, activate-environment: testenv, miniconda-version: latest} | |
| - name: Set conda for Arm64 | |
| if: runner.arch == 'arm64' && runner.os == 'macOS' | |
| run: conda config --env --set subdir osx-arm64 | |
| - name: Install HDF5 (${{matrix.version}}${{matrix.mpi && '-' || ''}}${{matrix.mpi}}) | |
| run: | | |
| [ "${{matrix.mpi}}" != "" ] && MPICC_PKG=${{matrix.mpi}}-mpicc | |
| conda install -y -c ${{matrix.channel}} 'hdf5=${{matrix.version}}=*${{matrix.mpi}}*' $MPICC_PKG | |
| - name: Build and test all crates | |
| run: | | |
| export HDF5_DIR="$CONDA_PREFIX" | |
| [ "${{matrix.mpi}}" != "" ] && FEATURES=mpio | |
| [ "${{runner.os}}" != "Windows" ] && export RUSTFLAGS="-C link-args=-Wl,-rpath,$CONDA_PREFIX/lib" | |
| [ "${{matrix.mpi}}" == "mpich" ] && [ "${{runner.os}}" == "Linux" ] && export MPICH_CC=$(which gcc) | |
| [ "${{matrix.mpi}}" == "openmpi" ] && [ "${{runner.os}}" == "Linux" ] && export OMPI_CC=$(which gcc) | |
| cargo test -vv --features="$FEATURES" | |
| static: | |
| name: static | |
| runs-on: ${{matrix.os}}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {os: ubuntu, rust: stable} | |
| - {os: windows, rust: stable-msvc} | |
| # - {os: windows, rust: stable-gnu} | |
| - {os: macos, rust: stable} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: {submodules: true} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: '${{matrix.rust}}'} | |
| - name: Build and test all crates | |
| run: cargo test --workspace -vvv --features hdf5-sys/static,hdf5-sys/zlib --exclude hdf5-metno-derive | |
| - name: Build and test with filters and other features | |
| run: cargo test --workspace -v --features hdf5-sys/static,hdf5-sys/zlib,lzf,blosc,f16,complex --exclude hdf5-metno-derive | |
| if: matrix.rust != 'stable-gnu' | |
| - name: Run examples | |
| run: | | |
| cargo r --example simple --features hdf5-sys/static,hdf5-sys/zlib,lzf,blosc | |
| cargo r --example chunking --features hdf5-sys/static,hdf5-sys/zlib,lzf,blosc | |
| if: matrix.rust != 'stable-gnu' | |
| apt: | |
| name: apt | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {mpi: mpich, rust: beta} | |
| - {mpi: openmpi, rust: stable} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: {submodules: true} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: '${{matrix.rust}}'} | |
| - name: Install HDF5 (${{matrix.mpi}}) | |
| run: | | |
| [ "${{matrix.mpi}}" == "mpich" ] && PACKAGES="libhdf5-mpich-dev mpich" | |
| [ "${{matrix.mpi}}" == "openmpi" ] && PACKAGES="libhdf5-openmpi-dev openmpi-bin" | |
| [ "${{matrix.mpi}}" == "serial" ] && PACKAGES="libhdf5-dev" | |
| sudo apt-get install $PACKAGES | |
| - name: Build and test all crates | |
| run: | | |
| [ "${{matrix.mpi}}" != "serial" ] && FEATURES=mpio | |
| cargo test -vv --features="$FEATURES" | |
| - name: Test crate for locking on synchronisation | |
| run: | | |
| [ "${{matrix.mpi}}" != "serial" ] && FEATURES=mpio | |
| cargo test -vv --features="$FEATURES" -- lock_part | |
| cargo test -vv --features="$FEATURES" -- lock_part | |
| cargo test -vv --features="$FEATURES" -- lock_part | |
| msi: | |
| name: msi | |
| runs-on: windows-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| rust: [stable] | |
| version: ["1.8", "1.10", "1.12", "1.14"] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: {submodules: true} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: '${{matrix.rust}}'} | |
| - name: Configure environment | |
| shell: bash | |
| run: | | |
| if [[ "${{matrix.version}}" == "1.8" ]]; then | |
| VERSION=1.8.21 | |
| DL_PATH=hdf5-1.8.21-Std-win7_64-vs14.zip | |
| echo "MSI_PATH=hdf\\HDF5-1.8.21-win64.msi" >> $GITHUB_ENV | |
| elif [[ "${{matrix.version}}" == "1.10" ]]; then | |
| VERSION=1.10.0 | |
| DL_PATH=windows/extra/hdf5-1.10.0-win64-VS2015-shared.zip | |
| echo "MSI_PATH=hdf5\\HDF5-1.10.0-win64.msi" >> $GITHUB_ENV | |
| elif [[ "${{matrix.version}}" == "1.12" ]]; then | |
| VERSION=1.12.0 | |
| DL_PATH=hdf5-1.12.0-Std-win10_64-vs16.zip | |
| echo "MSI_PATH=hdf\\HDF5-1.12.0-win64.msi" >> $GITHUB_ENV | |
| else | |
| VERSION=1.14.0 | |
| DL_PATH=windows/hdf5-1.14.0-Std-win10_64-vs16.zip | |
| echo "MSI_PATH=hdf\\HDF5-1.14.0-win64.msi" >> $GITHUB_ENV | |
| fi | |
| BASE_URL=https://support.hdfgroup.org/ftp/HDF5/releases | |
| echo "DL_URL=$BASE_URL/hdf5-${{matrix.version}}/hdf5-$VERSION/bin/$DL_PATH" >> $GITHUB_ENV | |
| echo "C:\\Program Files\\HDF_Group\\HDF5\\$VERSION\\bin" >> $GITHUB_PATH | |
| - name: Install HDF5 (${{matrix.version}}) | |
| shell: pwsh | |
| run: | | |
| C:\msys64\usr\bin\wget.exe -q -O hdf5.zip ${{env.DL_URL}} | |
| 7z x hdf5.zip -y | |
| msiexec /i ${{env.MSI_PATH}} /quiet /qn /norestart | |
| - name: Build and test all crates | |
| run: cargo test -vv | |
| # mingw: | |
| # name: mingw | |
| # runs-on: windows-latest | |
| # strategy: | |
| # fail-fast: false | |
| # matrix: | |
| # rust: [stable] | |
| # steps: | |
| # - name: Checkout repository | |
| # uses: actions/checkout@v3 | |
| # with: {submodules: true} | |
| # - name: Install Rust (${{matrix.rust}}) | |
| # uses: dtolnay/rust-toolchain@stable | |
| # with: {toolchain: '${{matrix.rust}}', targets: x86_64-pc-windows-gnu} | |
| # - name: Install HDF5 | |
| # shell: pwsh | |
| # run: | | |
| # $env:PATH="$env:PATH;C:\msys64\mingw64\bin;C:\msys64\usr\bin;" | |
| # C:\msys64\usr\bin\pacman.exe -Syu --noconfirm | |
| # C:\msys64\usr\bin\pacman.exe -S --noconfirm mingw-w64-x86_64-hdf5 mingw-w64-x86_64-pkgconf | |
| # - name: Build and test all crates | |
| # shell: pwsh | |
| # run: | | |
| # $env:PATH="$env:PATH;C:\msys64\mingw64\bin;" | |
| # cargo test -vv --target=x86_64-pc-windows-gnu | |
| msrv: | |
| name: Minimal Supported Rust Version | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: {submodules: true} | |
| - name: Install Rust | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: "1.80"} | |
| - name: Build and test all crates | |
| run: | |
| cargo test --workspace -vv --features=hdf5-sys/static,hdf5-sys/zlib --exclude=hdf5-metno-derive | |
| # wine: | |
| # name: wine | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Checkout repository | |
| # uses: actions/checkout@v3 | |
| # with: {submodules: true} | |
| # - name: Install Rust | |
| # uses: dtolnay/rust-toolchain@stable | |
| # with: {toolchain: stable, targets: x86_64-pc-windows-gnu} | |
| # - name: Install dependencies | |
| # run: sudo apt-get update && sudo apt install wine64 mingw-w64 | |
| # - name: Build and test | |
| # env: | |
| # CARGO_TARGET_X86_64_PC_WINDOWS_GNU_RUNNER: wine64 | |
| # run: cargo test --workspace --features hdf5-sys/static --target x86_64-pc-windows-gnu --exclude=hdf5-metno-derive | |
| addr_san: | |
| name: Address sanitizer | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: {submodules: true} | |
| - name: Install Rust | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: nightly, profile: minimal, override: true} | |
| - name: Run test with sanitizer | |
| env: | |
| RUSTFLAGS: "-Z sanitizer=address" | |
| run: cargo test --features hdf5-sys/static --target x86_64-unknown-linux-gnu --workspace --exclude hdf5-metno-derive |