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Readme for Stochastic Disease Model | ||
Created 8 October 2024 | ||
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Main Script to run is OneStage.m. | ||
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Functions within main script: | ||
- Movement1Stage.m -- file that simulates movement between neighbouring patches. | ||
- Spread_beta.m -- file that simulates the disease spread through contact within each patch (S->E). | ||
- RecoverDeath.m -- file that simulates the other stages of disese (E->I, I->R). | ||
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Data needed to run the main script: | ||
- Populations.mat -- Projected population vector for each patch (1x592). | ||
- Q.mat -- Conditional probability of movement to each neighbouring patch (sum for each patch = 1). | ||
- Tindale.mat -- Provides area for each patch based on Tindale map (1940). | ||
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To run, set initial contition for E0(starting patch {1,...,592}) = number of initial exposed individuals. |