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Mattia Bosio edited this page Mar 27, 2018 · 5 revisions

eDiVA pipeline

Welcome to eDiVA wiki,

eDiVA goes from fastq files to prioritized list of variants for genomics data. It is composed of four main steps but it requires several external components to work properly. In the first link, Install and setup, the external links and requirements are listed, as well as tips on NextFlow configuration to run eDiVA locally or within an HPC environment, with or without Docker implementation

Disclaimer for Steps 2- 4 eDiVA steps 2-4 are currently available online at http://www.ediva.crg.eu/ , where the database is maintained and updated when needed. To run this part of the pipeline locally, please follow the installation intstructions for Docker usage here

**Extra documentation""

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