Release v0.12.5

chore(release): phd-thesis 0.12.5

fix: four cogs figure
figures: Create figure for orthorhombisation
writing(abstract): I now have one!!
editing: Fixing issues in grammar
editing(methods): Move code snippets to appendix
editing(methods): The simulation conditions
editing(methods): Molecular dynamics section
figures: Remove placeholder
writing: Include blog posts in thesis
editing(methods): Finish editing all methods sections
chore: Ignore lints on blog posts
writing: Add details about projects
fix: Ordering of blog posts