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Lpjml2magpie - #916

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k4rst3ns wants to merge 51 commits into
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FelicitasBeier:lpjml2magpie
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Lpjml2magpie#916
k4rst3ns wants to merge 51 commits into
magpiemodel:developfrom
FelicitasBeier:lpjml2magpie

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🐦 Description of this PR 🐦

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🔧 Checklist for PR creator 🔧

If a point is not applicable, check the checkbox anyway and write "non-applicable" next to the checkbox.

  • Label pull request from the label list.

    • Low risk: Simple bugfixes (missing files, updated documentation, typos) or changes in start or output scripts
    • Medium risk: Uncritical changes in the model core (e.g. moderate modifications in non-default realizations)
    • High risk: Critical changes in model core or default settings (e.g. changing a model default or adjusting a core mechanic in the model)
  • Self-review own code

    • No hard coded numbers and cluster/country/region names.
    • The new code doesn't contain declared but unused parameters or variables.
    • magpie4 R library has been updated accordingly and backwards compatible where necessary.
    • scenario_config.csv has been updated accordingly (important if default.cfg has been updated)
  • Document changes

    • Add changes to CHANGELOG.md
    • Where relevant, put In-code documentation comments
    • Properly address updates in interfaces in the module documentations
    • run goxygen::goxygen() and verify the modified code is properly documented
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      • Run a compilation check via Rscript start.R --> "compilation check"
    • Medium risk:
      • Run default run via Rscript start.R --> "default"
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    • High risk:
      • Run test runs via Rscript start.R --> "test runs"
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📉 Performance 📈

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🚨 Checklist for reviewer 🚨

  • PR is labeled correctly
  • Code changes look reasonable
    • No hard coded numbers and cluster/country/region names.
    • No unnecessary increase in module interfaces
    • model behavior/performance is satisfactory.
  • Changes are properly documented
    • CHANGELOG is updated correctly
    • Updates in interfaces have been properly addressed in the module documentations
    • In-code documentation looks appropriate

mscrawford and others added 30 commits July 4, 2025 11:36
- Fix nl_fix.gms: add missing division by p14_yields_gsadapt_ratio_cumulative
  to match the equation in equations.gms (crop yields were inconsistent
  between NLP and LP solve phases when s14_gsadapt2tau=1)
- Fix start script typo: gsadpat -> gsadapt (all gsadapt test runs were dead code)
- Fix spelling: cummulative -> cumulative (variable name, 6 occurrences)
- Fix placeholder description in declarations.gms
- Remove misplaced EOF comment at top of presolve.gms
- Add division-by-zero protection (+1e-8) in presolve gsadapt ratio calculations
- Document max(1,...) ratchet design choice in presolve.gms
- Fix comment typos in croparea modules (Are -> Area, pcm_land -> pcm_area)
- Add missing trailing newlines

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
The fallback branch of i14_modeled_yields_hist2 (for regions with
near-zero crop area) was incorrectly using raw f14_yields instead of
i14_yields_calib_combined, and was missing the yldtype dimension.
This made it inconsistent with the managementcalib_aug19 realization
and with the non-fallback branch in the same calculation.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Remove the +1e-8 guards from p14_yields_gsadapt_ratio and
p14_yields_gsadapt_ratio_previous denominators in presolve.gms.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
fix: gsadapt audit — critical bug fixes and cleanup
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3 participants