v1.0.0 First Release

First Release

Added

• The first version of the repo.

To Do

• Test predict_structure.py in newest version of the AlphaFold2 repository.
• Add greedy and MCMC fixed-backbone AlphaFold2 optimization script and AlphaFold2 hallucination script.
• Add DMP2 gradient-based hallucination and greedy hill-climbing hallucination scripts, including refinement and dual options.
• Include updated links to the sequence, structure prediction, and pLDDT datasets for variable length and static length datasets.
• Include variable length + topology conditional DARK model scripts with parameter downloads.