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updated helper function netMetaModel to use session key as data input
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#' @title netmeta model | ||
#' @description | ||
#' Creates a netmeta model which is used for further function calls | ||
#' @param d | ||
#' A \code{string} representing the dataset name that is used to fit the netmeta model. | ||
#' @param reference | ||
#' A \code{string} representing the reference category that should be used for the netmeta model. | ||
#' @return returns nothing but creates a netmeta model which could be uses in other function calls | ||
#' @author Robert Studtrucker | ||
#' @export | ||
netMetaModel <- function(d,reference="Placebo") { | ||
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#load needed dependencies | ||
requireNamespace("netmeta") | ||
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#load the in variable d defined dataset from the package | ||
dat <- checkData(d) | ||
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TE <- dat[,"TE"] | ||
seTE <- dat[,"seTE"] | ||
studlab<-dat[,"studlab"] | ||
treat1<-dat[,"treat1"] | ||
treat2<-dat[,"treat2"] | ||
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combined_treat<-c() | ||
combined_treat<-c(combined_treat,dat["treat1"],recursive = TRUE,use.names=FALSE) | ||
combined_treat<-c(combined_treat,dat["treat2"],recursive = TRUE,use.names=FALSE) | ||
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nma1<-netmeta::netmeta( | ||
data=dat, | ||
TE=TE, | ||
seTE = seTE, | ||
studlab = studlab, | ||
treat1 = treat1, | ||
treat2 = treat2, | ||
comb.fixed = FALSE, | ||
seq = unique(combined_treat)[!is.na(unique(combined_treat))], | ||
tol.multiarm=0.1, | ||
ref = reference, | ||
warn = FALSE) | ||
} | ||
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#' @title netmeta model | ||
#' @description | ||
#' Creates a netmeta model which is used for further function calls | ||
#' @param d | ||
#' A \code{string} representing the dataset name that is used to fit the netmeta model. | ||
#' @param reference | ||
#' A \code{string} representing the reference category that should be used for the netmeta model. | ||
#' @return returns nothing but creates a netmeta model which could be uses in other function calls | ||
#' @author Robert Studtrucker | ||
#' @export | ||
netMetaModel <- function(d,reference="Placebo") { | ||
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#load needed dependencies | ||
requireNamespace("netmeta") | ||
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#load the in variable d defined dataset from the package | ||
dat <- d | ||
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TE <- dat[,"TE"] | ||
seTE <- dat[,"seTE"] | ||
studlab<-dat[,"studlab"] | ||
treat1<-dat[,"treat1"] | ||
treat2<-dat[,"treat2"] | ||
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combined_treat<-c() | ||
combined_treat<-c(combined_treat,dat["treat1"],recursive = TRUE,use.names=FALSE) | ||
combined_treat<-c(combined_treat,dat["treat2"],recursive = TRUE,use.names=FALSE) | ||
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nma1<-netmeta::netmeta( | ||
data=dat, | ||
TE=TE, | ||
seTE = seTE, | ||
studlab = studlab, | ||
treat1 = treat1, | ||
treat2 = treat2, | ||
comb.fixed = FALSE, | ||
seq = unique(combined_treat)[!is.na(unique(combined_treat))], | ||
tol.multiarm=0.1, | ||
ref = reference, | ||
warn = FALSE) | ||
} |