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Add transfer delete shap - #1

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yuanborong wants to merge 158 commits into
lav-patel:masterfrom
yuanborong:add_transfer_delete_SHAP
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Add transfer delete shap#1
yuanborong wants to merge 158 commits into
lav-patel:masterfrom
yuanborong:add_transfer_delete_SHAP

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trivialfis and others added 30 commits December 24, 2019 09:43
* Remove `learning_rates`.

It's been deprecated since we have callback.

* Set `before_iteration` of `reset_learning_rate` to False to preserve 
  the initial learning rate, and comply to the term "reset".

Closes dmlc#4709.

* Tests for various `tree_method`.

* Unused code.

* Split up old colmaker parameters from train param.

* Fix dart.

* Better name.
* Add OpenMP as CMake target

* Require CMake 3.12, to allow linking OpenMP target to objxgboost

* Specify OpenMP compiler flag for CUDA host compiler

* Require CMake 3.16+ if the OS is Mac OSX

* Use AppleClang in Mac tests.

* Update dmlc-core
* - implementation of map ranking algorithm
  - also effected necessary suggestions mentioned in the earlier ranking pr's
  - made some performance improvements to the ndcg algo as well
* Removed some data copying.

* Make sure gpu_id is valid before any configuration is carried out.
* Add block based threading utilities.
* Disable parameter validation for now.

Scikit-Learn passes all parameters down to XGBoost, whether they are used or
not.

* Add option `validate_parameters`.
* Make sure copy constructor is used.
* Lazy initialization of device vector.

* Fix dmlc#5162.

* Disable copy constructor of HostDeviceVector.  Prevents implicit copying.

* Fix CPU build.

* Bring back move assignment operator.
* Fix syncing DMatrix columns.
* notes for tree method.
* Enable feature validation for all interfaces except for jvm.
* Better tests for boosting from predictions.
* Disable validation on JVM.
)

* Simplify DropTrees calling logic

* Add `training` parameter for prediction method.

* [Breaking]: Add `training` to C API.

* Change for R and Python custom objective.

* Correct comment.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
* Explicitly use UTF-8 codepage when using MSVC

* Fix build with CUDA enabled
* Fix R dart prediction and add test.
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