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chore(deps): Bump the scoring-minor-and-patch group across 1 directory with 6 updates#129
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Bumps the scoring-minor-and-patch group with 6 updates in the /apps/scoring directory:

Package From To
scikit-learn 1.9.0 1.9.1
numpy 2.5.2 2.5.3
joblib 1.5.3 1.6.0
httpx2 2.12.0 2.13.0
ruff 0.16.5 0.16.8
matplotlib 3.11.1 3.11.2

Updates scikit-learn from 1.9.0 to 1.9.1

Release notes

Sourced from scikit-learn's releases.

Scikit-learn 1.9.1

We're happy to announce the 1.9.1 release.

This release contains a few bug fixes and is the first version supporting Python 3.15.

You can see the changelog here: https://scikit-learn.org/stable/whats_new/v1.9.html#version-1-9-1

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn

Thanks to everyone who contributed to this release !

Commits
  • 866c0f5 generate changelog
  • 12f135f update upper bounds
  • 43ff2f2 bump version
  • b851524 DOC Mark dev index as orphan (#34916)
  • 01d56d4 DOC Fix wikipedia principal eigenvector example references (#34915)
  • b86a1e2 🔒 🤖 CI Update lock files for array-api CI build(s) 🔒 🤖 ...
  • d282698 🔒 🤖 CI Update lock files for main CI build(s) 🔒 🤖 (#34897)
  • eb34279 🔒 🤖 CI Update lock files for free-threaded CI build(s) 🔒 :rob...
  • 7581303 FIX: Fix QuantileTransformer(ignore_implicit_zeros=True) sub-sampling behav...
  • ac47f4d FIX: avoid EfficiencyWarning in OPTICS with metric='precomputed' (#34692)
  • Additional commits viewable in compare view

Updates numpy from 2.5.2 to 2.5.3

Release notes

Sourced from numpy's releases.

v2.5.3 (Sep 6, 2026)

NumPy 2.5.3 Release Notes

The NumPy 2.5.3 is a patch release that fixes bugs discovered after the 2.5.2 release. Apart from the usual bug and maintenance work, there are a number of StringDType related fixes for problems discovered during the ongoing string work in the main branch.

This release supports Python versions 3.12-3.15

Changes

  • Casting a fixed-width byte string array (np.bytes_) to StringDType now raises TypeError when the bytes are not valid UTF-8. Previously the invalid bytes were stored as-is and later caused undefined behavior in string operations.

    (gh-32296)

  • MaskedArray._fill_value would become stale when ufuncs that change dtype left the result holding a fill_value typed for the old dtype. The mismatch was silent until something later called _check_fill_value, such as .view(), and then a TypeError would be raised. Now, when the copied fill_value is no longer valid for the new dtype, fall back to the default fill_value for that dtype instead of propagating the stale value. This may raise a ComplexWarning if the fill_value is complex and the new dtype is real.

    (gh-32423)

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Iason Krommydas
  • James Davies +
  • Joren Hammudoglu
  • Maanas Arora
  • Matti Picus
  • Nathan Goldbaum
  • Shikhar Goel +
  • Yeonho Kim +

Pull requests merged

A total of 27 pull requests were merged for this release.

  • #32235: MAINT: Prepare 2.5.x for further development

... (truncated)

Commits
  • dd88c0c Merge pull request #32511 from charris/prepare-2.5.3
  • edcac6a REL: Prepare for the NumPy 2.5.3 release
  • fd4d908 Merge pull request #32509 from charris/backport-32496
  • 65bb1da BUG: fix crash in ufunc.resolve_dtypes with a Python scalar type (#32496)
  • 294956e Merge pull request #32506 from charris/backport-32503
  • 26428d9 DOC: fix scipy docs links in intersphinx mapping (#32507)
  • 5fab1cb DOC: use static scipy doc site for intershpinx (#32503)
  • 7beed2f Merge pull request #32481 from ngoldbaum/stringdtype-backport
  • 8972f70 Merge pull request #32478 from charris/backport-32466
  • ab1b589 Merge pull request #32477 from charris/backport-32423
  • Additional commits viewable in compare view

Updates joblib from 1.5.3 to 1.6.0

Changelog

Sourced from joblib's changelog.

Release 1.6.0 - 2026/08/31

  • Fix caching of functions whose source cannot be retrieved, such as functions defined in a notebook cell. Their identity fell back to str(hash(func.__code__)), which is salted by PYTHONHASHSEED and so differed between processes. A worker reading the func_code.py written by another one concluded that the function had changed and wiped the whole cache directory for it, discarding results computed by its peers. func_code.py is also no longer rewritten in place, so a reader can no longer catch it half-written and draw the same conclusion. joblib/joblib#1694

  • Drop python 3.9 support. The oldest supported Python version is now Python 3.10. joblib/joblib#1773

  • Fix eval_expr (used to evaluate the pre_dispatch argument of Parallel) to raise a ValueError as documented instead of leaking a ZeroDivisionError for expressions that divide or take a modulo by zero. joblib/joblib#1810

  • MemorizedResult now forwards mmap_mode to its store backend, so a cached array reconstructed from a location is memory-mapped as requested instead of being loaded fully into memory. joblib/joblib#1799

  • Unvendor cloudpickle to more quickly benefit from maintenance releases of cloudpickle joblib/joblib#1775

  • Fix Memory.cache for functions with a keyword-only argument that has a default declared before a keyword-only argument without a default. joblib/joblib#1731

  • Fix behavior of filter_args on some precise cases. joblib/joblib#1800

  • Fix a concurrency error that could happen with unordered generator. joblib/joblib#1789

  • Fix: dump() now accepts any input os.PathLike object to be consistent with load. joblib/joblib#1812

  • The documentation now uses pydata sphinx theme. Furthermore, optional dependencies test and docs have been added to pyproject.toml. joblib/joblib#1774

  • Vendor loky 3.6.0

... (truncated)

Commits
  • cd9a6b0 Release 1.6.0 (#1844)
  • d873f97 MNT vendor loky 3.6.0 (#1843)
  • 4ff61af Bump the github-actions group with 4 updates (#1832)
  • 804f472 FIX make func_code stable across processes when the source is unavailable (#1...
  • 65cc49d TST Restore RNG sequence in hash compatibility test (#1837)
  • c1b6541 CI Use pytest-run-parallel on free-threaded build (#1819)
  • f6b80d3 MNT Simplify isinstance check in hashing (#1835)
  • fa4d5af MNT remove python 3.9 from CI (#1773)
  • 53cea7b DOC Update release docs to reflect usage of trusted publishing (#1826)
  • 26500e9 Bump the github-actions group across 1 directory with 3 updates (#1790)
  • Additional commits viewable in compare view

Updates httpx2 from 2.12.0 to 2.13.0

Release notes

Sourced from httpx2's releases.

v2.13.0

Highlights

🔐 Reliable TLS verification controls

The CLI --no-verify flag now disables TLS certificate verification as intended, and --verify provides an explicit counterpart (pydantic/httpx2#1140, pydantic/httpx2#1186).

🧹 Safer async stream cleanup

Stopping a streamed response early no longer risks a nested async generator finalization error (pydantic/httpx2#1204).

httpx2

Changed

  • Require brotlicffi 1.2.0.2 or later for the brotli extra on non-CPython implementations in pydantic/httpx2#1179

Fixed

httpcore2

Changed

Fixed

  • Avoid nested async generator finalization errors when streamed responses are abandoned early in pydantic/httpx2#1204

Full Changelog: pydantic/httpx2@v2.12.0...v2.13.0

Changelog

Sourced from httpx2's changelog.

2.13.0 (September 14th, 2026)

Changed

  • Require brotlicffi 1.2.0.2 or later for the brotli extra on non-CPython implementations. (#1179)

Fixed

  • Make the --no-verify CLI flag disable TLS certificate verification and add an explicit --verify counterpart. (#1140, #1186)
  • Avoid nested async generator finalization errors when streamed responses are abandoned early. (#1204)
Commits

Updates ruff from 0.16.5 to 0.16.8

Release notes

Sourced from ruff's releases.

0.16.8

Release Notes

Released on 2026-09-16.

Bug fixes

  • Visit functional TypedDict keyword arguments correctly (#28584)
  • [flake8-simplify] Detect nested async with under sync parent (SIM117) (#27821)
  • [flake8-simplify] Preserve operand order in SIM109 fix (#27824)
  • [pyupgrade] Preserve required parentheses in multiline UP040 fixes (#28164)
  • [pyupgrade] Skip TypeVarTuple and ParamSpec conversions with bounds or constraints (UP040, UP046, UP047) (#28505)

Rule changes

  • Add support for __lazy_modules__ (#28459)
  • Recognize PEP-728 TypedDict class keywords (#28533)
  • Recognize quoted types in typing.TypeForm (#28507)
  • Support conditional assignment to __lazy_modules__ (#28491)
  • [flake8-type-checking] Prefer lazy imports over TYPE_CHECKING on Python 3.15 and later (TC001, TC002, TC003) (#28541)
  • [pyupgrade] Make the fix for UP040 always unsafe (#28526)
  • [pyupgrade] Stop recommending deprecated ByteString aliases (UP035) (#28498)
  • [ruff, flake8-use-pathlib] Recognize the parent_mode argument (RUF064, PTH103) (#28528)
  • [ruff] Detect \Z in pytest.raises() match patterns (RUF043) (#28598)

CLI

  • Use rule name and code in formatter incompatibility warnings (#28571)

Configuration

  • [flake8-tidy-imports] Add extend-banned-api (#28644)

Contributors

Install ruff 0.16.8

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.16.8/ruff-installer.sh | sh
</tr></table>

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.8

Released on 2026-09-16.

Bug fixes

  • Visit functional TypedDict keyword arguments correctly (#28584)
  • [flake8-simplify] Detect nested async with under sync parent (SIM117) (#27821)
  • [flake8-simplify] Preserve operand order in SIM109 fix (#27824)
  • [pyupgrade] Preserve required parentheses in multiline UP040 fixes (#28164)
  • [pyupgrade] Skip TypeVarTuple and ParamSpec conversions with bounds or constraints (UP040, UP046, UP047) (#28505)

Rule changes

  • Add support for __lazy_modules__ (#28459)
  • Recognize PEP-728 TypedDict class keywords (#28533)
  • Recognize quoted types in typing.TypeForm (#28507)
  • Support conditional assignment to __lazy_modules__ (#28491)
  • [flake8-type-checking] Prefer lazy imports over TYPE_CHECKING on Python 3.15 and later (TC001, TC002, TC003) (#28541)
  • [pyupgrade] Make the fix for UP040 always unsafe (#28526)
  • [pyupgrade] Stop recommending deprecated ByteString aliases (UP035) (#28498)
  • [ruff, flake8-use-pathlib] Recognize the parent_mode argument (RUF064, PTH103) (#28528)
  • [ruff] Detect \Z in pytest.raises() match patterns (RUF043) (#28598)

CLI

  • Use rule name and code in formatter incompatibility warnings (#28571)

Configuration

  • [flake8-tidy-imports] Add extend-banned-api (#28644)

Contributors

0.16.7

Released on 2026-09-10.

Preview features

  • [ruff] Add rule for default values on method receivers (RUF077) (#26700)

... (truncated)

Commits
  • 62914c4 Bump version to 0.16.8 (#28648)
  • c47e0cd [ty] Bound aliased intersection expansion during inference (#28546)
  • ff4747b renovate: update uv hashes correctly with setup-uv (#28621)
  • 94efeaa [ty] Compact reachable binding and declaration histories (#28349)
  • 50020fb [ty] Avoid storing constraint nodes twice (#28375)
  • 446bb68 [ty] Compare bound-method receivers before signatures (#28384)
  • 304ab86 [flake8-type-checking] Prefer lazy imports over TYPE_CHECKING on 3.15+ (`...
  • d940b24 [ty] Watch script dependencies in CLI watch mode (#28125)
  • fe9f065 [flake8-tidy-imports] Add extend-banned-api (#28644)
  • 31131db [ty] Support type[A & B] (#27124)
  • Additional commits viewable in compare view

Updates matplotlib from 3.11.1 to 3.11.2

Release notes

Sourced from matplotlib's releases.

REL: v3.11.2

This is the second bugfix release of the 3.11.x series.

This release contains several bug-fixes and adjustments:

  • Speed up RGBA-stage image resampling
  • Fix hexbin clipping in PDF output
  • Fix \text with internal braces
  • Fix some crashes and make some checks more robust to unlikely cases
  • Fix frame skew when saving GIF animations with PillowWriter
  • Fix HiDPI handling in Qt toolbar and WebAgg embeddings
  • Fix ResizeEvent handling for TextBox
  • Fix bug with PGF hatch linewidth and color
  • Fix a bug with drawing an empty Collection
  • Fix incorrect glyphs in Cairo backends
  • Improve build system to prevent conflicts between wheels and system libraries
Commits
  • d3ca917 REL: v3.11.2
  • b76fea9 DOC: Set current version to 3.11.2
  • 39c7f06 DOC: Prepare GitHub stats for 3.11.2
  • 5dd13e3 Merge branch 'v3.11.1-doc' into release-3.11.2
  • aa484be Merge branch 'v3.11.0-doc' into v3.11.1-doc
  • 0e10f83 Merge pull request #32330 from meeseeksmachine/auto-backport-of-pr-32324-on-v...
  • ebe947b Backport PR #32324: Don't force any diagnostics to be errors in bundled Harfbuzz
  • 8f4b7c5 Merge pull request #32322 from meeseeksmachine/auto-backport-of-pr-32321-on-v...
  • 93278ad Backport PR #32321: DOC: correct note about PyOS_InputHook
  • b0aee78 Merge pull request #32319 from meeseeksmachine/auto-backport-of-pr-32305-on-v...
  • Additional commits viewable in compare view

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@dependabot
chore(deps): Bump the scoring-minor-and-patch group across 1 director…
86167f7 
…y with 6 updates

Bumps the scoring-minor-and-patch group with 6 updates in the /apps/scoring directory:

| Package | From | To |
| --- | --- | --- |
| [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.9.0` | `1.9.1` |
| [numpy](https://github.com/numpy/numpy) | `2.5.2` | `2.5.3` |
| [joblib](https://github.com/joblib/joblib) | `1.5.3` | `1.6.0` |
| [httpx2](https://github.com/pydantic/httpx2) | `2.12.0` | `2.13.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.16.5` | `0.16.8` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.11.1` | `3.11.2` |



Updates `scikit-learn` from 1.9.0 to 1.9.1
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.9.0...1.9.1)

Updates `numpy` from 2.5.2 to 2.5.3
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.5.2...v2.5.3)

Updates `joblib` from 1.5.3 to 1.6.0
- [Release notes](https://github.com/joblib/joblib/releases)
- [Changelog](https://github.com/joblib/joblib/blob/main/CHANGES.rst)
- [Commits](joblib/joblib@1.5.3...1.6.0)

Updates `httpx2` from 2.12.0 to 2.13.0
- [Release notes](https://github.com/pydantic/httpx2/releases)
- [Changelog](https://github.com/pydantic/httpx2/blob/main/src/httpx2/CHANGELOG.md)
- [Commits](pydantic/httpx2@v2.12.0...v2.13.0)

Updates `ruff` from 0.16.5 to 0.16.8
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.16.5...0.16.8)

Updates `matplotlib` from 3.11.1 to 3.11.2
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.11.1...v3.11.2)

---
updated-dependencies:
- dependency-name: scikit-learn
  dependency-version: 1.9.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: scoring-minor-and-patch
- dependency-name: numpy
  dependency-version: 2.5.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: scoring-minor-and-patch
- dependency-name: joblib
  dependency-version: 1.6.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: scoring-minor-and-patch
- dependency-name: httpx2
  dependency-version: 2.13.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: scoring-minor-and-patch
- dependency-name: ruff
  dependency-version: 0.16.8
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: scoring-minor-and-patch
- dependency-name: matplotlib
  dependency-version: 3.11.2
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: scoring-minor-and-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added area:scoring apps/scoring - FastAPI service type:security Security impact or hardening labels Sep 21, 2026
@dependabot
dependabot Bot requested a review from la3679 as a code owner September 21, 2026 06:21
@dependabot dependabot Bot added type:security Security impact or hardening area:scoring apps/scoring - FastAPI service labels Sep 21, 2026
@dependabot @github

dependabot Bot commented on behalf of github Oct 5, 2026

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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Oct 5, 2026
@dependabot
dependabot Bot deleted the dependabot/uv/apps/scoring/scoring-minor-and-patch-91fc927156 branch October 5, 2026 06:21
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