NeuroData's registration library, built in python using ITK
Submit bug reports here.
The easiest way to install ndreg with docker. To build a new Docker image: docker build . -t ndreg-jupyter
To run and test with a sample notebook on port 8888: docker run -p 8888:8888 ndreg-jupyter
If you want to save notebooks, you will need to mount a local path, e.g:
docker run -p 8888:8888 -v pwd/notebooks:/run/notebooks ndreg-jupyter
More advanced users can build ndreg from scratch
- Install dependancies
sudo apt-get -y install cmake python-numpy libinsighttoolkit4-dev libfftw3-dev- Proceded to Installing ndreg
- Build and install ITK 4.10.0 or later
itkVersion=4.10.0
itkMinorVersion=`echo ${itkVersion} | cut -d'.' -f 1,2`
mkdir itk; cd itk
wget https://sourceforge.net/projects/itk/files/itk/${itkMinorVersion}/InsightToolkit-${itkVersion}.tar.gz
tar -vxzf InsightToolkit-${itkVersion}.tar.gz
mv InsightToolkit-${itkVersion} src/
mkdir bin; cd bin
cmake -G "Unix Makefiles" -DITK_USE_SYSTEM_FFTW=OFF -DITK_USE_FFTWD=ON -DITK_USE_FFTWF=ON -DModule_ITKReview=ON ../src
make && sudo make install-
For Ubuntu 15.10 and earlier
-
Install dependances
sudo apt-get -y install cmake-
Proceded to Installing ndreg
-
For Centos 6.7 and later
-
Install dependances
sudo yum -y install libjpeg-devel cmake
sudo /usr/local/bin/pip install --trusted-host www.simpleitk.org -f http://www.simpleitk.org/SimpleITK/resources/software.html SimpleITK
sudo /usr/local/bin/pip install blosc==1.3.0- Proceded to Installing ndreg
git clone https://github.com/neurodata/ndreg.git
cd ndreg
cmake .
make && sudo make install