Extend to input by Tescan instruments#58
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# Conflicts: # mapping_cli.py # src/resources/maps/acquisition_map.csv # src/resources/maps/image_map.csv
(for better or worse)
# Conflicts: # requirements.txt
typo
…ng based on file extension anymore. Function still included. More detailed debug logging
Resulting fix for preprocessor date handling
…r is found, allowing to define more setup md files than present in an input.
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This PR is an extension to Tescan input. It introduces significant improvements to the tomography mapping pipeline by adding support for multiple sources and parsers, and enriching the output with a fileLink field in image metadata (md) records. The fileLink record also prepares the code for transparency improvement in how images metadata are grouped within datasets.
New parsers:
New input map files:
Changes made:
retrieve_setup_infoandretrieve_run_infologics to parse each (source, parser) pair.This PR closes #36 and #17