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Install biopython in dockerfile #262

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Merged
crockettz merged 2 commits into from
Oct 20, 2025
Merged

Install biopython in dockerfile #262

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075e120
Fixing missing dependency
crockettz Oct 20, 2025
14c9dd6
Install biopython in dockerfile
crockettz Oct 20, 2025
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3 changes: 2 additions & 1 deletion Dockerfile
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Expand Up @@ -24,7 +24,8 @@ RUN pip install ete3==3.1.2 PyQt5==5.11.3 numpy==1.23.1

# Install MatPlotLib
RUN pip install matplotlib==3.5.2

# Install Bio
RUN pip install biopython
# Install MUSCLE
#
RUN mkdir -p /kb/module/muscle/bin && \
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1 change: 1 addition & 0 deletions lib/kb_phylogenomics/kb_phylogenomicsImpl.py
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Expand Up @@ -11,6 +11,7 @@
import uuid
import random
import subprocess
from Bio import SeqIO

from datetime import datetime
from pprint import pformat,pprint
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