Skip to content

DEVOPS-2382 Fix missing cog.aux#258

Merged
bio-boris merged 12 commits intomainfrom
missing-cog-aux
May 13, 2025
Merged

DEVOPS-2382 Fix missing cog.aux#258
bio-boris merged 12 commits intomainfrom
missing-cog-aux

Conversation

@bio-boris
Copy link
Copy Markdown
Contributor

The params that the KBPArallel gets are failing with a missing cog.aux file

                 'job_input': {'app_id': 'DomainAnnotation',
                               'method': 'DomainAnnotation.search_domains',
                               'narrative_cell_info': {},
                               'params': [{'dms_ref': 'KBasePublicGeneDomains/All-1.0.8',

When you make a cell for DomainAnnotation you can see

        "dms_ref": "KBasePublicGeneDomains/All-1.0.10",

@bio-boris bio-boris changed the title Update kb_phylogenomicsImpl.py DEVOPS-2382 Fix missing cog.aux May 7, 2025
Copy link
Copy Markdown
Collaborator

@crockettz crockettz left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

These look good to me. My testing of the beta version of the module seems to confirm that the fix is working.

@bio-boris bio-boris merged commit a899744 into main May 13, 2025
2 checks passed
@bio-boris bio-boris deleted the missing-cog-aux branch May 13, 2025 17:32
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants