Test another trigger

.github/workflows/R-CMD-check.yaml

@@ -4,17 +4,14 @@ on:
   push:
     branches: [main, master]
   pull_request:
-  workflow_run:
-    workflows: ["Style"]
-    types:
-      - completed
 
 name: R-CMD-check.yaml
 
 permissions: read-all
 
 jobs:
   R-CMD-check:
+    if: startsWith(github.event.comment.body, 'Style workflow completed. Please trigger the check workflow.')
     runs-on: ${{ matrix.config.os }}
 
     name: ${{ matrix.config.os }} (${{ matrix.config.r }})

.github/workflows/format-code.yml

@@ -73,3 +73,12 @@ jobs:
           else
             echo "No changes to commit."
           fi
+
+      - name: Comment on PR
+        if: github.event_name == 'pull_request'  # Only run this if it's a PR
+        run: |
+          curl -X POST \
+            -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" \
+            -H "Accept: application/vnd.github.v3+json" \
+            -d '{"body":"Style workflow completed. Please trigger the check workflow."}' \
+            https://api.github.com/repos/${{ github.repository }}/issues/${{ github.event.issue.number }}/comments

R/calculate_diff_abundance.R

@@ -366,7 +366,7 @@ Please provide a valid reference condition.", prefix = "\n", initial = ""))
       }
     }
 
-    if (method == "t-test_mean_sd") {
+    if (method == "t-test_mean_sd"){
       if (ref_condition == "all") {
         # creating all pairwise comparisons
         all_conditions <- unique(dplyr::pull(data, {{ condition }}))