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Merged
merged 42 commits into from
Mar 4, 2025
Merged

Auth OIDC merged #10

merged 42 commits into from
Mar 4, 2025

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sjanssen2
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antgonza and others added 30 commits April 16, 2024 06:06
* Update CHANGELOG.md

* clean db files + add human_reads_filter_method

* fix db errors

* modify inserts to be in the correct order
* Update CHANGELOG.md

* human_reads_filter_method

* address @charles-cowart comment and expose value to the GUI
* Update CHANGELOG.md

* general fixes after deployment

* some updates

* some minor changes
* Update CHANGELOG.md

* SPP description
* Update CHANGELOG.md

* add suggestions from @ackermag
* minor changes after deployment

* update qiime 2

* update conda qiime2 to 3.10

* install tiny Q2

* rm conda update

* qtp-biom

* tiny -> amplicon

* fix workflow GUI

* nltk<=3.8.1
* Update to DB qiita.slurm_resource_allocations

* qiita-cron-job initialize-resource-allocations-redis

* Populate redis with resource-allocation data

* Removed changes to qiita_pet

This pull request should only contain changes with uploading data to redis. I accidentally commited some changes to qiita_pet here.

* Minor changes

* Updates to Antonio’s coments

* Update meta_util.py
* 2024.09

* addressing @charles-cowart comments

* update based on @qiyunzhu recommendations
* Update to DB qiita.slurm_resource_allocations

* qiita-cron-job initialize-resource-allocations-redis

* Populate redis with resource-allocation data

* Removed changes to qiita_pet

This pull request should only contain changes with uploading data to redis. I accidentally commited some changes to qiita_pet here.

* Minor changes

* Updates to Antonio’s coments

* Update meta_util.py

* Added webpage for resource allocation plots

* Update resources.py
* doc improvemnts

* doc improvements

* METAGENOMICS -> Metagenomics

* 2024.10

* scp -O
* fix qiita-spots#3438

* fix qiita-spots#3436

* self->cls

* rm ()

* adding tests

* fix test

* fix flake8
antgonza and others added 12 commits October 18, 2024 12:00
* Update CHANGELOG.md

* improve complete_job

* CREATE pg_trgm

* EXTENSION IF NOT EXISTS

* fix tests

* SELECT change

* = -> ILIKE
* some changes

* rm circular import

* AMPLICON

* AMPLICON tests

* reservation

* fix errors

* fix qiita_db tests

* fix trace

* addressing @charles-cowart comments
* fix qiita-spots#3389

* add coverages

* update html [no ci]

* no copyfile

* missing [ - no ci

* Dowload -> Download
* fix qiita-spots#3451

* fix test_base_handlers.py

* fix test_generate_analysis_list
* fix add_default_workflow

* fix get_merging_scheme_from_job

* gp_params is not None

* str(y.id)
* 2025.01

* addressing comment @charles-cowart
* Update to DB qiita.slurm_resource_allocations

* added colormap, create equation table

* Fixed styling

* Using qiita.allocation_equations table in util.py

* Debug

* Updates to @antgonza comments

* Changes to @antgonza comments

* Back to np.log
* 2025.02

* update CHANGELOG.md
@sjanssen2 sjanssen2 merged commit a5deb83 into auth_oidc Mar 4, 2025
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3 participants