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Merged
jkmckenna merged 1 commit into from
Feb 14, 2026
Merged

Update bam_functions.py #361

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5 changes: 2 additions & 3 deletions src/smftools/informatics/bam_functions.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1209,9 +1209,8 @@ def _match_barcode_to_references(
Minimum required distance to the second-best match. If the gap between
best and second-best distances is smaller, the match is rejected.
padded_region : str, optional
Padded region with flanking context. If provided, uses padded scoring
(dorado-style) by aligning fixed-length barcode reference against the
variable-length padded region using HW (infix) alignment.
Padded region. If provided, aligns fixed-length barcode reference against the
variable-length padded region using HW semi-global alignment.

Returns
-------
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