fixed link to tutorial (PCM workshop) #1
jingchengxAnnotations
2 errors
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documentation:
src/moves_semidirected.jl#L301
doctest failure in ~/work/PhyloNetworks.jl/PhyloNetworks.jl/src/moves_semidirected.jl:301-317
```jldoctest
julia> str_network = "(((S8,S9),(((((S1,S2,S3),S4),(S5)#H1),(#H1,(S6,S7))))#H2),(#H2,S10));";
julia> net = readTopology(str_network);
julia> using Random; Random.seed!(3);
julia> undoinfo = nni!(net, net.edge[3], true, true); # true's to avoid hybrid ladders and 3-cycles
julia> writeTopology(net)
"(((S8,(((((S1,S2,S3),S4),(S5)#H1),(#H1,(S6,S7))))#H2),S9),(#H2,S10));"
julia> nni!(undoinfo...);
julia> writeTopology(net) == str_network # net back to original topology: the NNI was "undone"
true
```
Subexpression:
writeTopology(net)
Evaluated output:
"((((((((S1,S2,S3),S4),(S5)#H1),(#H1,(S6,S7))))#H2,S9),S8),(#H2,S10));"
Expected output:
"(((S8,(((((S1,S2,S3),S4),(S5)#H1),(#H1,(S6,S7))))#H2),S9),(#H2,S10));"
diff =
Warning: Diff output requires color.
"(((S8,(((((S1,S2,S3),S4),(S5)#H1),(#H1,(S6,S7))))#H2),S9),(#H2,S10));""((((((((S1,S2,S3),S4),(S5)#H1),(#H1,(S6,S7))))#H2,S9),S8),(#H2,S10));"
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documentation
Process completed with exit code 1.
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