population_genomics

Several R scripts for population and landscape genomics analyses.

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
BioClim_Along_Gradient.R		BioClim_Along_Gradient.R
Extracting_Environment.R		Extracting_Environment.R
GATK_VariantsToTable.sh		GATK_VariantsToTable.sh
GATK_combineGVCFs.sh		GATK_combineGVCFs.sh
GATK_genotypeGVCFs.sh		GATK_genotypeGVCFs.sh
GATK_haplotype_caller.sh		GATK_haplotype_caller.sh
GATK_jointcalling_gnuparallel.sh		GATK_jointcalling_gnuparallel.sh
GATK_variantfiltration.sh		GATK_variantfiltration.sh
Global_unbiased_Fst_Hierfstat.R		Global_unbiased_Fst_Hierfstat.R
PCA-environmentalvariables.R		PCA-environmentalvariables.R
PCA_with_SNPrelate.R		PCA_with_SNPrelate.R
PopGen-SummayStats.R		PopGen-SummayStats.R
PopulationStructure.R		PopulationStructure.R
Population_Genomics.R		Population_Genomics.R
RDA.R		RDA.R
README.md		README.md
Variable_Selection.R		Variable_Selection.R
additional_filters.sh		additional_filters.sh
bcftools_removing_multiallelic_SNPs.sh		bcftools_removing_multiallelic_SNPs.sh
haplotypecaller_lastsample.sh		haplotypecaller_lastsample.sh
jointcalling_gatkmodel_barbara.sh		jointcalling_gatkmodel_barbara.sh
mergeVCFs.sh		mergeVCFs.sh
processingstepsGATK-bashfunctions.sh		processingstepsGATK-bashfunctions.sh

Provide feedback