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54 Open 126 Closed
54 Open 126 Closed
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Issues list

add more information to portal docs about how clinical data are harmonized/journey of a dataset
#248 opened Feb 13, 2025 by lopierra
update contributor guide
#247 opened Feb 13, 2025 by lopierra
Consider whether the input data file formatting assumptions need to be parametrized in the code to handle other varieties of files, e.g. CSV or Excel files where the search data is in another sheet or the first sheet but another column.
#243 opened Feb 4, 2025 by tursynay Y5 Tasks - End of April 2025
Include other methods to download ontology content and convert to a SQLite database using semsql
#242 opened Feb 4, 2025 by tursynay Y5 Tasks - End of April 2025
Sort out how to download a new version of an ontology when an older version already exists in ~/.data/oaklib/. Note: This can not be done automatically. See https://incatools.github.io/ontology-access-kit/faq/troubleshooting.html#my-cached-sqlite-ontology-is-out-of-date
#241 opened Feb 4, 2025 by tursynay Y5 Tasks - End of March 2025
Add a requirements.txt file to include which Python packages need to be installed.
#240 opened Feb 4, 2025 by tursynay Y5 Tasks - End of March 2025
Develop sets of Activity metadata fields for different activity types Assay
#237 opened Jan 22, 2025 by lopierra Y5 Tasks - End of February 2025
@lopierra
Reorganize/clean up LinkML model linkml Issues that require linkml development
#235 opened Jan 17, 2025 by lopierra Y5 Tasks - End of February 2025
@lopierra @madanucd
2
Review HTP report on HPO/MONDO annotations Harmonica harmonization
#232 opened Jan 14, 2025 by lopierra
2 tasks
@lopierra
2
Evaluate and decide one INCLUDE LinkML Validator options linkml Issues that require linkml development
#231 opened Jan 14, 2025 by tursynay
@madanucd
Use the knowledge graphs currently in CAVATICA and add documentation documentation Improvements or additions to documentation KG
#230 opened Jan 14, 2025 by tursynay
3 tasks
Y5 Tasks - End of February 2025
@madanucd
Develop RDF Graph Generation Tool KG linkml Issues that require linkml development
#229 opened Jan 14, 2025 by tursynay
@madanucd
Create a LinkML RDF Schema (LinkML Model in graphical representation) KG linkml Issues that require linkml development
#228 opened Jan 14, 2025 by tursynay
2 tasks
@madanucd
1
Start incorporating new Family model into LinkML Family linkml Issues that require linkml development
#222 opened Jan 9, 2025 by lopierra Y5 Tasks - End of February 2025
@lopierra
Review sources for Proteomics/Metabolomics metadata fields Assay
#221 opened Jan 9, 2025 by lopierra Y5 Tasks - End of February 2025
@lopierra
Add ORCID (and possibly other DataCite fields) to Study Study
#219 opened Dec 13, 2024 by lopierra
@lopierra
1
Add validation rules linkml Issues that require linkml development
#218 opened Dec 4, 2024 by lopierra
@lopierra
1
Add NIH Intake Sheet fields to LinkML model Study
#215 opened Nov 20, 2024 by lopierra Y5 Tasks - End of February 2025
@lopierra
add mass + unit to Biospecimen slots Biospecimen
#212 opened Nov 11, 2024 by lopierra
@lopierra
update contributor guide and portal help pages for v6 documentation Improvements or additions to documentation
#209 opened Nov 9, 2024 by lopierra
@lopierra
1
Add model release number to validator? linkml Issues that require linkml development
#196 opened Jun 21, 2024 by lopierra
@madanucd
Roll "Prefer not to answer" into "Unknown" for Race, Ethnicity and re-harmonize previous data harmonization linkml Issues that require linkml development
#185 opened May 15, 2024 by lopierra
@lopierra
Develop enumerations for the field: Data Type
#180 opened Apr 30, 2024 by monicacecilia
@lopierra
Develop enumerations for the field: Experimental Strategy
#178 opened Apr 30, 2024 by monicacecilia
@lopierra
Develop enumerations for the field: Data Category
#177 opened Apr 30, 2024 by monicacecilia
@lopierra
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